View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8873_low_9 (Length: 386)
Name: NF8873_low_9
Description: NF8873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8873_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 19 - 380
Target Start/End: Complemental strand, 36780339 - 36779987
Alignment:
| Q |
19 |
atttcaggaaagtagacaacccacacgcaaacaattcaagttcattaagccacctcgagatctcaagcatgaaaggaatcatttcgaaaaatcttagttg |
118 |
Q |
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| T |
36780339 |
atttcaggaaagtagacaacccacacgcaaacaattcaagttcattaagccacctcgagatctcaagcatgaaaggaatcatttcgaaaaatctcagttg |
36780240 |
T |
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| Q |
119 |
tttatattttatctaaagtagtatccactatccactccaaagaaagaagaagacagtgctatttttagtaatttaaaatgtacat-caatattggattgg |
217 |
Q |
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| T |
36780239 |
tttatattttatctaaagtagtatccgct-------ccaaagaaag---aagacagtgacatttttagtaatttaaaatgtacataaaatattggattgg |
36780150 |
T |
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| Q |
218 |
gacctgctactgtctgtcgccattacttgagcacgttacaccaggtttctcattactaaccttctattctataaatagatatcaatactctccaaccaaa |
317 |
Q |
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| T |
36780149 |
gacctgctactgtctgtcgccattacttgagcacgttacaccaggtttctcattactaaccttctattctataaatagatatcaatactctccaaccaaa |
36780050 |
T |
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| Q |
318 |
taaacacacaccaaaaatggcaactatgattggaggatctgttttgctatgcttcatctcact |
380 |
Q |
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| T |
36780049 |
taaacacacgccaaaaatggcgactatgtttggaggatctgttttgctatgcttcttctcact |
36779987 |
T |
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