View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8874_high_2 (Length: 401)
Name: NF8874_high_2
Description: NF8874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8874_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 47537338 - 47537719
Alignment:
| Q |
1 |
atatatattatggaccattgctatcaatttcgaaacttgtataatacgattctaagaaataaaataaaatgctagttaatcttgaacagtaacttactag |
100 |
Q |
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| T |
47537338 |
atatatattatggaccattgctatcaatttcgaaacttgtataatacgattctaagaaataaaataaaatgctagttaatcttgaacagtaacttactag |
47537437 |
T |
|
| Q |
101 |
actcagctgtggaaaagctgattttctcggatggacttgcctataattgtaaaacttccatcattaaagttggtgggtgctggtgacttctcttgtgaaa |
200 |
Q |
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| T |
47537438 |
actcagctgtggaaaagctgattttctcggatggacttgcctataattgtaaaacttccatcattaaagttggtgggtgctggtgacttctcttgtgaaa |
47537537 |
T |
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| Q |
201 |
aatacagaggaatacaatgaataagtagaaatgcagttttctttccttcaacggaaaggaagctctgttcctgccaaattggtgtagtatttctccatag |
300 |
Q |
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| T |
47537538 |
aatacagaggaatacaatgaataagtagaaatgcagttttctttccttcaacggaaaggaagctctgttcctgccaaattggtgtagtatttctccatag |
47537637 |
T |
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| Q |
301 |
tttggttttcaaagtcaaatatagaaaactgggggctaggaagccnnnnnnnattgcttgcataattggctctaatagtctt |
382 |
Q |
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| T |
47537638 |
tttggttttcaaagtcaaatatagaaaactgggggctaggaagcctttttttattgcttgcataattggctctaatagtctt |
47537719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 212 - 328
Target Start/End: Original strand, 47544136 - 47544251
Alignment:
| Q |
212 |
atacaatgaataagtagaaatgcagttttctttccttcaacggaaaggaagctctgttcctgccaaattggtgtagtatttctccatagtttggttttca |
311 |
Q |
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||||||||||||||||||| | ||||| |||||||||| | |||||||||||||||| || |||||||||| ||||||||||||||||||||||| | |
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| T |
47544136 |
atacaatgaataagtagaattt-agtttcttttccttcaaggtaaaggaagctctgttcgtgtcaaattggtgaagtatttctccatagtttggtttccg |
47544234 |
T |
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| Q |
312 |
aagtcaaatatagaaaa |
328 |
Q |
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|||||| |||||||||| |
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| T |
47544235 |
aagtcagatatagaaaa |
47544251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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