View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8874_high_3 (Length: 345)
Name: NF8874_high_3
Description: NF8874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8874_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 17 - 327
Target Start/End: Original strand, 21597875 - 21598185
Alignment:
| Q |
17 |
agcagagaaacctgacgcggcgtaagagaggataatggaaggaccagcatcgagacgagcttcttgacctgtaacgacgaagataccagagccaacaaca |
116 |
Q |
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| T |
21597875 |
agcagagaaacctgacgcggcgtaagagaggataatggaaggaccagcatcgaaacgagcttcttgaccggtaacgacgaagataccagagccaacgaca |
21597974 |
T |
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| Q |
117 |
gcgccgaaagcgagccatgttaagtcccaccaagtgagacaacgagtcattgtattttcactagctttgggaaggacgagaagttcatgagagtctgttg |
216 |
Q |
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| T |
21597975 |
gcgccgaaagcgagccatgttaagtcccaccaagtgagacaacgagtcattgtattttcactggctttgggaaggacgagaagttcatgggagtctgttg |
21598074 |
T |
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| Q |
217 |
atcggttgaggagacggtcttttagacgtgggcaggtgtttgctaaggcggttcgataggtttctccggtttggaaagatggttctgggaagaaatcttg |
316 |
Q |
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| T |
21598075 |
atcggtttaggagacggtcttttagacgtgggcaggtgtttgctaaggcggttcgataggtttctccggtttggaaagatggttctgggaagaaatcttg |
21598174 |
T |
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| Q |
317 |
cttgctccatc |
327 |
Q |
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| T |
21598175 |
cttgctccatc |
21598185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 11987643 - 11987687
Alignment:
| Q |
21 |
gagaaacctgacgcggcgtaagagaggataatggaaggaccagca |
65 |
Q |
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| T |
11987643 |
gagaatcctgaagcggcgtaggagaggataatggaaggaccagca |
11987687 |
T |
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