View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8874_low_1 (Length: 913)
Name: NF8874_low_1
Description: NF8874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8874_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 839; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 839; E-Value: 0
Query Start/End: Original strand, 11 - 897
Target Start/End: Original strand, 45944975 - 45945861
Alignment:
| Q |
11 |
gattatactcaagggctagttataagtacataagagaatttggttggaatgaaactttggccaggagttcatacgagtgggttgaaaagaaggttgtttt |
110 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45944975 |
gattctactcaagggctagttataagtacataagagaatttggttggaatgaaactttggccaggagttcatacgagtgggttgaaaagaaggttgtttt |
45945074 |
T |
|
| Q |
111 |
tgagccttcaatgcttcaatggcaatcagcagttagggacggtttacttgaagcagggattttgccttacaacggttttacatttgatcatgtatatggg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45945075 |
tgagccttcaatgcttcaatggcaatcagcagttagggacggtttacttgaagcagggattttgccttacaacggttttacatttgatcatgtatatggg |
45945174 |
T |
|
| Q |
211 |
actaaggttggagggacaacttttgataaggaaggttataaacacactgcagctgatttgttagagtatgccgatccaaagagaatttctgtttatttgc |
310 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45945175 |
actaaggttggagggacaattttcgataaggaaggtcataaacacactgcagctgatttgttagagtatgccgatccaaagagaatttctgtttatttgc |
45945274 |
T |
|
| Q |
311 |
atgccacagttcaaaagatactattcaagtggaatgcaggtatgtaatgtatctaagaatacatatgcctcattgttagctacttagctttttacatcgg |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
45945275 |
atgccacagttcaaaagatactattcaagtggaatgcaggtatgtaatgtatctaagaatacatacgcctcattgttagctacttagctttttacatcgg |
45945374 |
T |
|
| Q |
411 |
atccaacactattggtcttggtgtgtaactcaatgaatagactccgataccatataggaaatagatgaaattaattatgacaagtagcaaaatttaatag |
510 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45945375 |
atccaacactattggtcttggtgtgtaactcaatgaatagactccgataccatataggaaatagatgaaattaattatgacaagtagcaaaatttaatag |
45945474 |
T |
|
| Q |
511 |
ttttattagtttctttacacagccttaagctaacagttaaaaaggaacgaatgtttgcaacaaaaacaaaagacggaatggaggtattgatgtttttgaa |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
45945475 |
ttttattagtttctttacacagccttaagctaacagttaaaaaggaacgaatgtttgcaacaaaaaaaagagacggaatggaggtattgatgtttttgaa |
45945574 |
T |
|
| Q |
611 |
cattttattttgtacagaaaaaaggaggccacaagcttatggagtgattttcaaagatacattaggaatcatacatagagcatacataatctccaaagtg |
710 |
Q |
| |
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| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45945575 |
ctttttattttgtacagaaaaagggaggccacaagcttatggagtgattttcaaagatacattaggaatcatacatagagcatacataatctccaaagtg |
45945674 |
T |
|
| Q |
711 |
gataatgaaataattgtatcagctggtgcaattggaagtccacagttactgatgctgagtggcattggtcctgctaaccatcttaaggaacatggaatcc |
810 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
45945675 |
gataatgaaataattgtatcagctggtgcaattggaagtccacagttactgatgctgagtggcattggtcctgctaaccatcttaaggcgcttggaatcc |
45945774 |
T |
|
| Q |
811 |
aggtggttatggatcagccttttgttggtcaagggatggcagatagtccaaaaaatgttcttgttgttccttctcctttaccagtag |
897 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45945775 |
aggtggttatggatcagccttttgttggtcaagggatggcagatagtccaaaaaatgttcttgttgttccttctcctttaccagtag |
45945861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 11 - 340
Target Start/End: Original strand, 45938211 - 45938540
Alignment:
| Q |
11 |
gattatactcaagggctagttataagtacataagagaatttggttggaatgaaactttggccaggagttcatacgagtgggttgaaaagaaggttgtttt |
110 |
Q |
| |
|
|||| |||||||||||||| |||| ||||||||||| | ||||||||||||||||||||| | || |||||| || ||| ||||||||||||||| ||| |
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|
| T |
45938211 |
gattctactcaagggctagctatagttacataagagattctggttggaatgaaactttggctaagatttcatatgaatggattgaaaagaaggttgcttt |
45938310 |
T |
|
| Q |
111 |
tgagccttcaatgcttcaatggcaatcagcagttagggacggtttacttgaagcagggattttgccttacaacggttttacatttgatcatgtatatggg |
210 |
Q |
| |
|
||||||| |||| | |||||| |||||||||| ||||| ||||||| |||||||||| |||| |||||||| |||||| | |||||||| | |||||| |
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| T |
45938311 |
tgagcctcaaatgatgcaatggtaatcagcagtgagggatggtttacctgaagcaggggttttaccttacaatggttttgcttttgatcacttgtatggg |
45938410 |
T |
|
| Q |
211 |
actaaggttggagggacaacttttgataaggaaggttataaacacactgcagctgatttgttagagtatgccgatccaaagagaatttctgtttatttgc |
310 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||| |
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|
| T |
45938411 |
actaaggttggtgggacaatttttgataaggaaggttatagacacactgcagctgatttgttagagtatgctgatccaaagaaaatttcggtttatttgc |
45938510 |
T |
|
| Q |
311 |
atgccacagttcaaaagatactattcaagt |
340 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |
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|
| T |
45938511 |
atgcgacagttcaaaagatactattcaagt |
45938540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 623 - 892
Target Start/End: Original strand, 45938761 - 45939031
Alignment:
| Q |
623 |
tacagaaaaaaggaggccacaagcttatggagtgattttcaaagatacattaggaatcatacatagagcat-acataatctccaaagtggataatgaaat |
721 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||| |||||||||||||| ||||||||||| |||||| |||||| |||||||||| | |||||||| |
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|
| T |
45938761 |
tacagaaaaagggaggccacaagcatatggagtgatattcaaagatacattgggaatcatacaaagagcaacacataagctccaaagtgaagaatgaaat |
45938860 |
T |
|
| Q |
722 |
aattgtatcagctggtgcaattggaagtccacagttactgatgctgagtggcattggtcctgctaaccatcttaaggaacatggaatccaggtggttatg |
821 |
Q |
| |
|
||| |||||||||||||| |||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||| || |||||| || |
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|
| T |
45938861 |
aatagtatcagctggtgctattggaagtccacaattgttgatgccaagtggcattggtcctgctaaccatcttaaggaacatggaattcaagtggttttg |
45938960 |
T |
|
| Q |
822 |
gatcagccttttgttggtcaagggatggcagatagtccaaaaaatgttcttgttgttccttctcctttacc |
892 |
Q |
| |
|
||||||||||| || ||||||||||||||||||| ||||| || |||| ||||||||||||||| |||| |
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|
| T |
45938961 |
gatcagcctttggtaggtcaagggatggcagataatccaatgaacattctagttgttccttctcctctacc |
45939031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 267
Target Start/End: Original strand, 3091863 - 3092022
Alignment:
| Q |
108 |
ttttgagccttcaatgcttcaatggcaatcagcagttagggacggtttacttgaagcagggattttgccttacaacggttttacatttgatcatgtatat |
207 |
Q |
| |
|
|||| ||||| | |||| ||||||||||||||||||||| || || ||| | |||| ||| | ||||||||||| || ||||| | ||||||| | || |
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|
| T |
3091863 |
ttttcagcctcctatgcgtcaatggcaatcagcagttagagatggattattggaagtaggtgtgttgccttacaatggctttacttatgatcatattcat |
3091962 |
T |
|
| Q |
208 |
gggactaaggttggagggacaacttttgataaggaaggttataaacacactgcagctgat |
267 |
Q |
| |
|
||||||||||||||||| |||| ||||| | | ||| ||| |||||||||||||||| |
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|
| T |
3091963 |
gggactaaggttggaggtacaatctttgaccataatggtcatagacacactgcagctgat |
3092022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 229
Target Start/End: Original strand, 3083436 - 3083544
Alignment:
| Q |
121 |
atgcttcaatggcaatcagcagttagggacggtttacttgaagcagggattttgccttacaacggttttacatttgatcatgtatatgggactaaggttg |
220 |
Q |
| |
|
|||| ||||||||||||||||||||| || || ||| | |||| ||| | ||||||||||| || ||||| | |||||| | ||||||||||||||| |
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|
| T |
3083436 |
atgcgtcaatggcaatcagcagttagagatggattattggaagtaggtgtgttgccttacaatggctttacttatgatcacattcatgggactaaggttg |
3083535 |
T |
|
| Q |
221 |
gagggacaa |
229 |
Q |
| |
|
|||| |||| |
|
|
| T |
3083536 |
gaggtacaa |
3083544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 468 - 553
Target Start/End: Original strand, 41964101 - 41964185
Alignment:
| Q |
468 |
gaaatagatgaaattaattatgacaagtagcaaaatttaatagttttattagtttctttacacagccttaagctaacagttaaaaa |
553 |
Q |
| |
|
||||||||||||||| |||||| || || ||||||||||||| |||||| |||| | || |||| ||||| ||||||||||||| |
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|
| T |
41964101 |
gaaatagatgaaattgtttatgaaaa-tatcaaaatttaatagatttattggtttgtgtaaacagtcttaaagtaacagttaaaaa |
41964185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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