View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8874_low_4 (Length: 216)
Name: NF8874_low_4
Description: NF8874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8874_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 17 - 200
Target Start/End: Original strand, 45945678 - 45945861
Alignment:
| Q |
17 |
aatgaaataattgtatcagctggtgcaattggaagtccacagttactgatgctgagtggcattggtcctgctaaccatcttaaggaacatggaatccagg |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
45945678 |
aatgaaataattgtatcagctggtgcaattggaagtccacagttactgatgctgagtggcattggtcctgctaaccatcttaaggcgcttggaatccagg |
45945777 |
T |
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| Q |
117 |
tggttatggatcagccttttgttggtcaagggatggcagatagtccaaaaaatgttcttgttgttccttctcctttaccagtag |
200 |
Q |
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| T |
45945778 |
tggttatggatcagccttttgttggtcaagggatggcagatagtccaaaaaatgttcttgttgttccttctcctttaccagtag |
45945861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 17 - 195
Target Start/End: Original strand, 45938853 - 45939031
Alignment:
| Q |
17 |
aatgaaataattgtatcagctggtgcaattggaagtccacagttactgatgctgagtggcattggtcctgctaaccatcttaaggaacatggaatccagg |
116 |
Q |
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||||||||||| |||||||||||||| |||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||| || | |
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| T |
45938853 |
aatgaaataatagtatcagctggtgctattggaagtccacaattgttgatgccaagtggcattggtcctgctaaccatcttaaggaacatggaattcaag |
45938952 |
T |
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| Q |
117 |
tggttatggatcagccttttgttggtcaagggatggcagatagtccaaaaaatgttcttgttgttccttctcctttacc |
195 |
Q |
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||||| ||||||||||||| || ||||||||||||||||||| ||||| || |||| ||||||||||||||| |||| |
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| T |
45938953 |
tggttttggatcagcctttggtaggtcaagggatggcagataatccaatgaacattctagttgttccttctcctctacc |
45939031 |
T |
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