View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8875_high_1 (Length: 370)
Name: NF8875_high_1
Description: NF8875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8875_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 15945989 - 15946299
Alignment:
| Q |
1 |
ctttcttgaaaatgctgagaaggaattgcaattggtgagggaagaacaaacaaggataatgcagcttgttaagagaacaacagaatattatcaaggagga |
100 |
Q |
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| T |
15945989 |
ctttcttgaaaatgctgagaaggaattgcaattggtgagggaagaacaaacaaggataatgcagcttgttaagagaacaacagaatattatcaaggagga |
15946088 |
T |
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| Q |
101 |
gcttcaaaagacggtgcaggagaacagactctttatctatttgtgatagtgaaggattttctcggaatggttgatcaagcctgcatcgagattgctcgta |
200 |
Q |
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| T |
15946089 |
gcttcaaaagacggtgcaggagaacagactctttatctatttgtgatagtgaaggattttctcggaatggttgatcaagcctgtatcgagattgctcgta |
15946188 |
T |
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| Q |
201 |
acatgcagaaaaagaagacaacaaaggcaaagttttgaaagnnnnnnnntctatgttcgcaatttgttcatggcgtgaagacttctcatgtctatgtgac |
300 |
Q |
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| T |
15946189 |
acatgcagaaaaagaagacacctaagacaaagttttgaaa---aaaaagtctacgtctgcaatttttccatgacgtgaacacttctcatatctctgtgac |
15946285 |
T |
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| Q |
301 |
ttcaatgtaattga |
314 |
Q |
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|||||||||||||| |
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| T |
15946286 |
ttcaatgtaattga |
15946299 |
T |
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