View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8875_low_2 (Length: 367)
Name: NF8875_low_2
Description: NF8875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8875_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 42 - 350
Target Start/End: Original strand, 30328559 - 30328871
Alignment:
| Q |
42 |
aaacataacatatgagcaattaaaaagaaacccaaacatacaatgctaacaatgagtagtatgcttagagattttgaacacttacttgtttaca----ta |
137 |
Q |
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| T |
30328559 |
aaacataacatatgagcaattaaaaagaaacccaaacatacaatgctaacaatgagtagtatgtttagagattttgaacacttacttgattacatacata |
30328658 |
T |
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| Q |
138 |
cttgagtttggagaaatttgatggagtttgatttcttgaagtttggagagagtatgatttgtgttttgagtgtttttgaatatgtgggtggttcagtttc |
237 |
Q |
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| T |
30328659 |
cttgagtctggagaaatttgatggagtttgatttcttggagtttggagagagtatgatttgtgtttttagtgtttttgaatatgtgggtggttcaatttc |
30328758 |
T |
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| Q |
238 |
ttactttgaaacatgcttatagcataacgacaattaattgtcatttagtagtgaacatcaatcaactctcgttcaacaacgaacggtaattaattgtcgt |
337 |
Q |
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| T |
30328759 |
ttactttgaaatatgcttatagcagaacgacaattaattgtcattcagtagtgaacatcaatcaactctcgttcaacaatgaacggtaattaattgtcgt |
30328858 |
T |
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| Q |
338 |
tgagaacagtttg |
350 |
Q |
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| T |
30328859 |
tgagagcagtttg |
30328871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 47 - 231
Target Start/End: Original strand, 9696878 - 9697060
Alignment:
| Q |
47 |
taacatatgagcaattaaaaagaaacccaaacatacaatgctaacaatgagtagtatgcttagagattttgaacacttacttgtttacatacttgagttt |
146 |
Q |
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| T |
9696878 |
taacatgtgagcaattaaaaata--cctaatcatataaaactaacaatgtttagtatgcttagagattgtgaacacttacttgattaattgcttgagttt |
9696975 |
T |
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| Q |
147 |
ggagaaatttgatggagtttgatttcttgaagtttggagagagtatgatttgtgttttgagtgtttttgaatatgtgggtggttc |
231 |
Q |
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| T |
9696976 |
gaagaaattttatagagtttggtttattggagtttggagggagtacaatttgtgttttgagtgtttttcaatatgtgagtggttc |
9697060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 99 - 221
Target Start/End: Original strand, 39816246 - 39816371
Alignment:
| Q |
99 |
agtatgcttagagattttgaacacttacttgttt----acatacttgagtttggagaaatttgatggagtttgatttcttgaagtttggagagagtatga |
194 |
Q |
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| T |
39816246 |
agtatgcttagagattttaaacatttacttgattgattacttgcttgagtttgaataaatttcacggagtttgatctcttggagtttggagggagtataa |
39816345 |
T |
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| Q |
195 |
tttgtgttttgagtgtttttgaatatg |
221 |
Q |
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| T |
39816346 |
tttgtgttt-gagtgtttttgaatatg |
39816371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 193
Target Start/End: Complemental strand, 24083688 - 24083595
Alignment:
| Q |
100 |
gtatgcttagagattttgaacacttacttgtttacatacttgagtttggagaaatttgatggagtttgatttcttgaagtttggagagagtatg |
193 |
Q |
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| T |
24083688 |
gtatgctttgggatttggaacacttacttgattaatttcttgtctgtgaagaaatttgacggagtttgctttcttggagtttggagggagtatg |
24083595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 33427210 - 33427262
Alignment:
| Q |
133 |
acatacttgagtttggagaaatttgatggagtttgatttcttgaagtttggag |
185 |
Q |
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| T |
33427210 |
acatacttgtatttgaagaaatttgattgagattgatttcttgaagtttggag |
33427262 |
T |
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