View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8875_low_3 (Length: 361)

Name: NF8875_low_3
Description: NF8875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8875_low_3
NF8875_low_3
[»] chr4 (27 HSPs)
chr4 (2-310)||(1028020-1028328)
chr4 (302-347)||(22199493-22199538)
chr4 (308-347)||(47290300-47290339)
chr4 (309-347)||(46442078-46442116)
chr4 (309-347)||(53123265-53123303)
chr4 (310-347)||(10442581-10442618)
chr4 (310-347)||(21802114-21802151)
chr4 (310-347)||(44893007-44893044)
chr4 (311-347)||(36073583-36073619)
chr4 (311-347)||(44893660-44893696)
chr4 (309-347)||(2625071-2625109)
chr4 (309-347)||(4751681-4751719)
chr4 (313-347)||(9089104-9089138)
chr4 (313-347)||(24128473-24128507)
chr4 (309-343)||(31078612-31078646)
chr4 (309-347)||(36073185-36073223)
chr4 (310-347)||(7744906-7744943)
chr4 (310-347)||(50156373-50156410)
chr4 (309-341)||(11314044-11314076)
chr4 (311-343)||(33530479-33530511)
chr4 (159-226)||(1706618-1706685)
chr4 (177-228)||(7694035-7694086)
chr4 (311-341)||(25063369-25063399)
chr4 (307-341)||(37219872-37219906)
chr4 (309-347)||(49387680-49387718)
chr4 (161-202)||(6987750-6987791)
chr4 (159-228)||(28406906-28406975)
[»] scaffold0228 (2 HSPs)
scaffold0228 (308-347)||(16218-16257)
scaffold0228 (308-347)||(26170-26209)
[»] chr8 (25 HSPs)
chr8 (308-347)||(1645756-1645795)
chr8 (304-347)||(25581027-25581070)
chr8 (162-228)||(6509313-6509379)
chr8 (310-347)||(1503637-1503674)
chr8 (310-347)||(15187794-15187831)
chr8 (310-347)||(26041907-26041944)
chr8 (310-347)||(32064980-32065017)
chr8 (310-347)||(37985850-37985887)
chr8 (310-347)||(40779923-40779960)
chr8 (311-347)||(3596836-3596872)
chr8 (311-347)||(6108028-6108064)
chr8 (311-347)||(10044582-10044618)
chr8 (312-348)||(14129092-14129128)
chr8 (311-347)||(17841645-17841681)
chr8 (156-224)||(27028829-27028897)
chr8 (311-347)||(42754837-42754873)
chr8 (308-347)||(34665615-34665654)
chr8 (313-347)||(20091598-20091632)
chr8 (313-347)||(24211169-24211203)
chr8 (313-347)||(38017167-38017201)
chr8 (311-347)||(30055750-30055786)
chr8 (308-338)||(31347568-31347598)
chr8 (307-341)||(37132471-37132505)
chr8 (309-338)||(7017651-7017680)
chr8 (163-228)||(30013212-30013277)
[»] chr7 (19 HSPs)
chr7 (309-348)||(3962211-3962250)
chr7 (308-347)||(15577639-15577678)
chr7 (310-347)||(35445631-35445668)
chr7 (311-348)||(35876477-35876514)
chr7 (310-347)||(42612045-42612082)
chr7 (310-347)||(48880721-48880758)
chr7 (308-348)||(15329507-15329547)
chr7 (311-347)||(25167651-25167687)
chr7 (171-228)||(31771721-31771778)
chr7 (310-347)||(45637945-45637982)
chr7 (311-343)||(24395209-24395241)
chr7 (311-347)||(30848803-30848839)
chr7 (311-347)||(34483072-34483108)
chr7 (177-228)||(30812142-30812193)
chr7 (313-343)||(4974532-4974562)
chr7 (179-228)||(24895350-24895399)
chr7 (179-228)||(24909658-24909707)
chr7 (159-228)||(28165085-28165154)
chr7 (310-338)||(15238627-15238655)
[»] chr6 (19 HSPs)
chr6 (308-347)||(17705261-17705300)
chr6 (309-347)||(28675382-28675420)
chr6 (309-347)||(32702439-32702477)
chr6 (309-347)||(33696931-33696969)
chr6 (311-348)||(33695121-33695158)
chr6 (311-347)||(17175816-17175852)
chr6 (311-347)||(18365369-18365405)
chr6 (311-347)||(18370633-18370669)
chr6 (161-212)||(2455820-2455871)
chr6 (309-347)||(23290874-23290912)
chr6 (309-341)||(29693686-29693718)
chr6 (177-228)||(1275143-1275194)
chr6 (177-228)||(1401103-1401154)
chr6 (177-228)||(3168286-3168337)
chr6 (177-228)||(24838768-24838819)
chr6 (179-228)||(33787772-33787821)
chr6 (312-341)||(34238883-34238912)
chr6 (311-347)||(2309218-2309254)
chr6 (309-337)||(18889451-18889479)
[»] chr5 (18 HSPs)
chr5 (308-347)||(25398472-25398511)
chr5 (310-348)||(37321587-37321625)
chr5 (310-347)||(3521801-3521838)
chr5 (310-347)||(4892436-4892473)
chr5 (311-347)||(2477870-2477906)
chr5 (311-347)||(6043307-6043343)
chr5 (311-347)||(8145607-8145643)
chr5 (311-347)||(33584124-33584160)
chr5 (312-347)||(3363013-3363048)
chr5 (314-347)||(12851036-12851069)
chr5 (310-347)||(14138901-14138938)
chr5 (178-223)||(30217081-30217126)
chr5 (311-343)||(38899520-38899552)
chr5 (307-341)||(12614483-12614517)
chr5 (187-228)||(34117571-34117612)
chr5 (310-338)||(17545476-17545504)
chr5 (174-222)||(18875361-18875409)
chr5 (180-228)||(40335899-40335947)
[»] chr3 (26 HSPs)
chr3 (308-347)||(22426137-22426176)
chr3 (308-347)||(33114028-33114067)
chr3 (309-348)||(48161139-48161178)
chr3 (309-347)||(3137207-3137245)
chr3 (309-347)||(3456298-3456336)
chr3 (309-347)||(6042111-6042149)
chr3 (309-347)||(34482681-34482719)
chr3 (309-347)||(37216846-37216884)
chr3 (306-347)||(3574316-3574357)
chr3 (311-347)||(3089653-3089689)
chr3 (311-347)||(19650695-19650731)
chr3 (311-347)||(37522287-37522323)
chr3 (313-347)||(33145946-33145980)
chr3 (308-341)||(36864824-36864857)
chr3 (157-222)||(41644450-41644515)
chr3 (311-347)||(2754953-2754989)
chr3 (311-347)||(30385634-30385670)
chr3 (309-341)||(40328072-40328104)
chr3 (312-347)||(8320378-8320413)
chr3 (174-221)||(24158525-24158572)
chr3 (177-228)||(51510218-51510269)
chr3 (159-228)||(2201122-2201191)
chr3 (309-338)||(8361832-8361861)
chr3 (169-226)||(24280707-24280764)
chr3 (160-228)||(24887291-24887359)
chr3 (310-338)||(41224477-41224505)
[»] chr2 (19 HSPs)
chr2 (308-347)||(13355082-13355121)
chr2 (311-347)||(7475303-7475339)
chr2 (311-347)||(9293370-9293406)
chr2 (311-347)||(10662122-10662158)
chr2 (160-228)||(18066122-18066190)
chr2 (311-347)||(23267857-23267893)
chr2 (311-347)||(33380441-33380477)
chr2 (311-347)||(35160993-35161029)
chr2 (167-228)||(18179255-18179316)
chr2 (308-341)||(22592953-22592986)
chr2 (314-347)||(31174633-31174666)
chr2 (315-347)||(3989310-3989342)
chr2 (311-347)||(39819281-39819317)
chr2 (309-339)||(34320961-34320991)
chr2 (162-212)||(36863635-36863685)
chr2 (162-239)||(36852455-36852532)
chr2 (309-341)||(27847801-27847833)
chr2 (164-228)||(43205303-43205367)
chr2 (310-338)||(43331155-43331183)
[»] chr1 (20 HSPs)
chr1 (308-347)||(20304922-20304961)
chr1 (308-347)||(41876234-41876273)
chr1 (308-347)||(51737739-51737778)
chr1 (309-347)||(18404682-18404720)
chr1 (309-347)||(36966501-36966539)
chr1 (311-347)||(3559851-3559887)
chr1 (311-347)||(6883721-6883757)
chr1 (311-347)||(25463910-25463946)
chr1 (311-347)||(25973641-25973677)
chr1 (311-347)||(37821629-37821665)
chr1 (312-347)||(40215222-40215257)
chr1 (309-347)||(44094931-44094969)
chr1 (310-347)||(19015638-19015675)
chr1 (159-228)||(28482240-28482309)
chr1 (311-347)||(9910086-9910122)
chr1 (311-347)||(19722894-19722930)
chr1 (307-338)||(33786422-33786453)
chr1 (167-228)||(15515535-15515596)
chr1 (159-220)||(37811854-37811915)
chr1 (168-228)||(35017570-35017630)
[»] scaffold0204 (1 HSPs)
scaffold0204 (311-347)||(4630-4666)
[»] scaffold0096 (1 HSPs)
scaffold0096 (311-347)||(41244-41280)
[»] scaffold0085 (1 HSPs)
scaffold0085 (311-347)||(48083-48119)
[»] scaffold0471 (1 HSPs)
scaffold0471 (313-347)||(13076-13110)
[»] scaffold0178 (1 HSPs)
scaffold0178 (311-347)||(11855-11891)


Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 2 - 310
Target Start/End: Original strand, 1028020 - 1028328
Alignment:
Q  2 tgggtagtgcttaggaaactataagcctgtgaaagagcataataataacacaaagggtctacttggattgacttgtttgagtttatgtgttgcataagca 101  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  1028020 tgggtagtgcttaggaaactataagcctgggaaagagcataataataacacaaagggtctacttggattgacttgtttgagtttatctgttgcataagca 1028119  T
Q  102 tttatgagactcttggggagaacttatagacacaggcaaacagccgacaccatgtttttcataaactatttacaacttatttccttaagctctccacgat 201  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||    
T  1028120 tttatgagactcttggggagagcttatagacacaggcaaacagccgacaacatgtttttcataaactatttacaacttatttccttaagctctccaggat 1028219  T
Q  202 atcttatgaaagcagcttatagcttatgtatcaaaacactcatgaaagcagcttatagttatagcttatatcaaaacacttatgaaagcagtgtttagct 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  1028220 atcttatgaaagcagcttatagcttatgtatcaaaacactcatgaaagcaacttatagttatagcttatatcaaaacacttacgaaagcagtgtttagct 1028319  T
Q  302 tatatcaaa 310  Q
    |||||||||    
T  1028320 tatatcaaa 1028328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 302 - 347
Target Start/End: Complemental strand, 22199538 - 22199493
Alignment:
Q  302 tatatcaaaggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  22199538 tatataaaaggaaaatgctagatatcaagaatgattttataagaaa 22199493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 308 - 347
Target Start/End: Complemental strand, 47290339 - 47290300
Alignment:
Q  308 aaaggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  47290339 aaaggaaaatgctagatatcaagaatgattttataagaaa 47290300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 309 - 347
Target Start/End: Complemental strand, 46442116 - 46442078
Alignment:
Q  309 aaggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||||||||||||||||||||||||||||||    
T  46442116 aaggaaaatgctagatatcaagaatgattttataagaaa 46442078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 309 - 347
Target Start/End: Complemental strand, 53123303 - 53123265
Alignment:
Q  309 aaggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||||||||||||||||||||||||||||||    
T  53123303 aaggaaaatgctagatatcaagaatgattttataagaaa 53123265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 310 - 347
Target Start/End: Original strand, 10442581 - 10442618
Alignment:
Q  310 aggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    ||||||||||||||||||||||||||||||||||||||    
T  10442581 aggaaaatgctagatatcaagaatgattttataagaaa 10442618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 310 - 347
Target Start/End: Original strand, 21802114 - 21802151
Alignment:
Q  310 aggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21802114 aggaaaatgctagatatcaagaatgattttataagaaa 21802151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 310 - 347
Target Start/End: Original strand, 44893007 - 44893044
Alignment:
Q  310 aggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    ||||||||||||||||||||||||||||||||||||||    
T  44893007 aggaaaatgctagatatcaagaatgattttataagaaa 44893044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 311 - 347
Target Start/End: Complemental strand, 36073619 - 36073583
Alignment:
Q  311 ggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||||||||||||||||||||||||||||    
T  36073619 ggaaaatgctagatatcaagaatgattttataagaaa 36073583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 311 - 347
Target Start/End: Complemental strand, 44893696 - 44893660
Alignment:
Q  311 ggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||||||||||||||||||||||||||||    
T  44893696 ggaaaatgctagatatcaagaatgattttataagaaa 44893660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 309 - 347
Target Start/End: Complemental strand, 2625109 - 2625071
Alignment:
Q  309 aaggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  2625109 aaggaaaatgttagatatcaagaatgattttataagaaa 2625071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 309 - 347
Target Start/End: Complemental strand, 4751719 - 4751681
Alignment:
Q  309 aaggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  4751719 aaggaaaatgctagatatcaagaataattttataagaaa 4751681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 313 - 347
Target Start/End: Complemental strand, 9089138 - 9089104
Alignment:
Q  313 aaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||||||||||||||||||||||||||    
T  9089138 aaaatgctagatatcaagaatgattttataagaaa 9089104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 313 - 347
Target Start/End: Complemental strand, 24128507 - 24128473
Alignment:
Q  313 aaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||||||||||||||||||||||||||    
T  24128507 aaaatgctagatatcaagaatgattttataagaaa 24128473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 309 - 343
Target Start/End: Original strand, 31078612 - 31078646
Alignment:
Q  309 aaggaaaatgctagatatcaagaatgattttataa 343  Q
    |||||||||||||||||||||||||||||||||||    
T  31078612 aaggaaaatgctagatatcaagaatgattttataa 31078646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 309 - 347
Target Start/End: Complemental strand, 36073223 - 36073185
Alignment:
Q  309 aaggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  36073223 aaggaaaatgctagatatcaaaaatgattttataagaaa 36073185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 310 - 347
Target Start/End: Original strand, 7744906 - 7744943
Alignment:
Q  310 aggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  7744906 aggaaaatgttagatatcaagaatgattttataagaaa 7744943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 310 - 347
Target Start/End: Original strand, 50156373 - 50156410
Alignment:
Q  310 aggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  50156373 aggaaaatgttagatatcaagaatgattttataagaaa 50156410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 341
Target Start/End: Original strand, 11314044 - 11314076
Alignment:
Q  309 aaggaaaatgctagatatcaagaatgattttat 341  Q
    |||||||||||||||||||||||||||||||||    
T  11314044 aaggaaaatgctagatatcaagaatgattttat 11314076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 343
Target Start/End: Original strand, 33530479 - 33530511
Alignment:
Q  311 ggaaaatgctagatatcaagaatgattttataa 343  Q
    |||||||||||||||||||||||||||||||||    
T  33530479 ggaaaatgctagatatcaagaatgattttataa 33530511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 159 - 226
Target Start/End: Complemental strand, 1706685 - 1706618
Alignment:
Q  159 ttcataaactatttacaacttatttccttaagctctccacgatatcttatgaaagcagcttatagctt 226  Q
    ||||||| |||||| |||||||||| | |||||| |||| ||||  |||||||| |||||||||||||    
T  1706685 ttcataagctatttccaacttattttcataagctgtccaagatagtttatgaaaacagcttatagctt 1706618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 228
Target Start/End: Original strand, 7694035 - 7694086
Alignment:
Q  177 cttatttccttaagctctccacgatatcttatgaaagcagcttatagcttat 228  Q
    ||||||||| ||| ||||||| |||| ||||||||| |||||||||||||||    
T  7694035 cttatttccataaactctccaggataacttatgaaaacagcttatagcttat 7694086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 341
Target Start/End: Original strand, 25063369 - 25063399
Alignment:
Q  311 ggaaaatgctagatatcaagaatgattttat 341  Q
    |||||||||||||||||||||||||||||||    
T  25063369 ggaaaatgctagatatcaagaatgattttat 25063399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 341
Target Start/End: Complemental strand, 37219906 - 37219872
Alignment:
Q  307 caaaggaaaatgctagatatcaagaatgattttat 341  Q
    |||||||||||| ||||||||||||||||||||||    
T  37219906 caaaggaaaatgttagatatcaagaatgattttat 37219872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 347
Target Start/End: Original strand, 49387680 - 49387718
Alignment:
Q  309 aaggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  49387680 aaggaaaatgttagatatcaaggatgattttataagaaa 49387718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 6987750 - 6987791
Alignment:
Q  161 cataaactatttacaacttatttccttaagctctccacgata 202  Q
    |||||||||||| |||||||||||| ||||||||||| ||||    
T  6987750 cataaactattttcaacttatttccataagctctccaggata 6987791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 228
Target Start/End: Complemental strand, 28406975 - 28406906
Alignment:
Q  159 ttcataaactatttacaacttatttccttaagctctccacgatatcttatgaaagcagcttatagcttat 228  Q
    |||||||||||||| || ||||||||| |||||||| |  ||| |||||||||| || |||| |||||||    
T  28406975 ttcataaactatttgcagcttatttccataagctcttcctgatttcttatgaaaacaacttacagcttat 28406906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0228
Description:

Target: scaffold0228; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 308 - 347
Target Start/End: Complemental strand, 16257 - 16218
Alignment:
Q  308 aaaggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  16257 aaaggaaaatgctagatatcaagaatgattttataagaaa 16218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 308 - 347
Target Start/End: Complemental strand, 26209 - 26170
Alignment:
Q  308 aaaggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  26209 aaaggaaaatgctagatatcaagaatgattttataagaaa 26170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 308 - 347
Target Start/End: Original strand, 1645756 - 1645795
Alignment:
Q  308 aaaggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  1645756 aaaggaaaatgctagatatcaagaatgattttataagaaa 1645795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 304 - 347
Target Start/End: Original strand, 25581027 - 25581070
Alignment:
Q  304 tatcaaaggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  25581027 tatcaatggaaaatgctagatatcaagaatgattttataagaaa 25581070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 162 - 228
Target Start/End: Original strand, 6509313 - 6509379
Alignment:
Q  162 ataaactatttacaacttatttccttaagctctccacgatatcttatgaaagcagcttatagcttat 228  Q
    ||||||||||| || ||||||||  ||||||||||| |||| ||||||||| |||||||||||||||    
T  6509313 ataaactattttcaccttatttcaataagctctccaggatagcttatgaaaacagcttatagcttat 6509379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 310 - 347
Target Start/End: Original strand, 1503637 - 1503674
Alignment:
Q  310 aggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1503637 aggaaaatgctagatatcaagaatgattttataagaaa 1503674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 310 - 347
Target Start/End: Complemental strand, 15187831 - 15187794
Alignment:
Q  310 aggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    ||||||||||||||||||||||||||||||||||||||    
T  15187831 aggaaaatgctagatatcaagaatgattttataagaaa 15187794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 310 - 347
Target Start/End: Original strand, 26041907 - 26041944
Alignment:
Q  310 aggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26041907 aggaaaatgctagatatcaagaatgattttataagaaa 26041944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 310 - 347
Target Start/End: Complemental strand, 32065017 - 32064980
Alignment:
Q  310 aggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    ||||||||||||||||||||||||||||||||||||||    
T  32065017 aggaaaatgctagatatcaagaatgattttataagaaa 32064980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 310 - 347
Target Start/End: Original strand, 37985850 - 37985887
Alignment:
Q  310 aggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    ||||||||||||||||||||||||||||||||||||||    
T  37985850 aggaaaatgctagatatcaagaatgattttataagaaa 37985887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 310 - 347
Target Start/End: Original strand, 40779923 - 40779960
Alignment:
Q  310 aggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    ||||||||||||||||||||||||||||||||||||||    
T  40779923 aggaaaatgctagatatcaagaatgattttataagaaa 40779960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 311 - 347
Target Start/End: Original strand, 3596836 - 3596872
Alignment:
Q  311 ggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||||||||||||||||||||||||||||    
T  3596836 ggaaaatgctagatatcaagaatgattttataagaaa 3596872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 311 - 347
Target Start/End: Original strand, 6108028 - 6108064
Alignment:
Q  311 ggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||||||||||||||||||||||||||||    
T  6108028 ggaaaatgctagatatcaagaatgattttataagaaa 6108064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 311 - 347
Target Start/End: Complemental strand, 10044618 - 10044582
Alignment:
Q  311 ggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||||||||||||||||||||||||||||    
T  10044618 ggaaaatgctagatatcaagaatgattttataagaaa 10044582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 312 - 348
Target Start/End: Complemental strand, 14129128 - 14129092
Alignment:
Q  312 gaaaatgctagatatcaagaatgattttataagaaat 348  Q
    |||||||||||||||||||||||||||||||||||||    
T  14129128 gaaaatgctagatatcaagaatgattttataagaaat 14129092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 311 - 347
Target Start/End: Original strand, 17841645 - 17841681
Alignment:
Q  311 ggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||||||||||||||||||||||||||||    
T  17841645 ggaaaatgctagatatcaagaatgattttataagaaa 17841681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 27028897 - 27028829
Alignment:
Q  156 tttttcataaactatttacaacttatttccttaagctctccacgatatcttatgaaagcagcttatagc 224  Q
    |||||||||| |||||| || ||||||| | ||||||||||| |||| ||||||||| |||||||||||    
T  27028897 tttttcataagctattttcagcttattttcataagctctccaagatagcttatgaaaacagcttatagc 27028829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 311 - 347
Target Start/End: Original strand, 42754837 - 42754873
Alignment:
Q  311 ggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||||||||||||||||||||||||||||    
T  42754837 ggaaaatgctagatatcaagaatgattttataagaaa 42754873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 308 - 347
Target Start/End: Complemental strand, 34665654 - 34665615
Alignment:
Q  308 aaaggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  34665654 aaagaaaaatgctagatatcaagaatgattttataagaaa 34665615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 313 - 347
Target Start/End: Original strand, 20091598 - 20091632
Alignment:
Q  313 aaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||||||||||||||||||||||||||    
T  20091598 aaaatgctagatatcaagaatgattttataagaaa 20091632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 313 - 347
Target Start/End: Original strand, 24211169 - 24211203
Alignment:
Q  313 aaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||||||||||||||||||||||||||    
T  24211169 aaaatgctagatatcaagaatgattttataagaaa 24211203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 313 - 347
Target Start/End: Complemental strand, 38017201 - 38017167
Alignment:
Q  313 aaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||||||||||||||||||||||||||    
T  38017201 aaaatgctagatatcaagaatgattttataagaaa 38017167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 347
Target Start/End: Complemental strand, 30055786 - 30055750
Alignment:
Q  311 ggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||||||| ||||||||||||||||||||    
T  30055786 ggaaaatgctagatattaagaatgattttataagaaa 30055750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 338
Target Start/End: Original strand, 31347568 - 31347598
Alignment:
Q  308 aaaggaaaatgctagatatcaagaatgattt 338  Q
    |||||||||||||||||||||||||||||||    
T  31347568 aaaggaaaatgctagatatcaagaatgattt 31347598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 341
Target Start/End: Original strand, 37132471 - 37132505
Alignment:
Q  307 caaaggaaaatgctagatatcaagaatgattttat 341  Q
    ||||| |||||||||||||||||||||||||||||    
T  37132471 caaagaaaaatgctagatatcaagaatgattttat 37132505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 338
Target Start/End: Original strand, 7017651 - 7017680
Alignment:
Q  309 aaggaaaatgctagatatcaagaatgattt 338  Q
    ||||||||||||||||||||||||||||||    
T  7017651 aaggaaaatgctagatatcaagaatgattt 7017680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 30013277 - 30013212
Alignment:
Q  163 taaactatttacaacttatttccttaagctctccacgatatcttatgaaagcagcttatagcttat 228  Q
    |||||||||| || ||||||||| | || ||| || |||| ||||||||| |||||||||||||||    
T  30013277 taaactattttcagcttatttccattagttctacaggatagcttatgaaaacagcttatagcttat 30013212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 309 - 348
Target Start/End: Complemental strand, 3962250 - 3962211
Alignment:
Q  309 aaggaaaatgctagatatcaagaatgattttataagaaat 348  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  3962250 aaggaaaatgctagatatcaagaatgattttataagaaat 3962211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 308 - 347
Target Start/End: Original strand, 15577639 - 15577678
Alignment:
Q  308 aaaggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  15577639 aaaggaaaatgctagatatcaagaatgattttataagaaa 15577678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 310 - 347
Target Start/End: Complemental strand, 35445668 - 35445631
Alignment:
Q  310 aggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    ||||||||||||||||||||||||||||||||||||||    
T  35445668 aggaaaatgctagatatcaagaatgattttataagaaa 35445631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 311 - 348
Target Start/End: Complemental strand, 35876514 - 35876477
Alignment:
Q  311 ggaaaatgctagatatcaagaatgattttataagaaat 348  Q
    ||||||||||||||||||||||||||||||||||||||    
T  35876514 ggaaaatgctagatatcaagaatgattttataagaaat 35876477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 310 - 347
Target Start/End: Complemental strand, 42612082 - 42612045
Alignment:
Q  310 aggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    ||||||||||||||||||||||||||||||||||||||    
T  42612082 aggaaaatgctagatatcaagaatgattttataagaaa 42612045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 310 - 347
Target Start/End: Original strand, 48880721 - 48880758
Alignment:
Q  310 aggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    ||||||||||||||||||||||||||||||||||||||    
T  48880721 aggaaaatgctagatatcaagaatgattttataagaaa 48880758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 308 - 348
Target Start/End: Complemental strand, 15329547 - 15329507
Alignment:
Q  308 aaaggaaaatgctagatatcaagaatgattttataagaaat 348  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  15329547 aaaggaaaatgctagatataaagaatgattttataagaaat 15329507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 311 - 347
Target Start/End: Original strand, 25167651 - 25167687
Alignment:
Q  311 ggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||||||||||||||||||||||||||||    
T  25167651 ggaaaatgctagatatcaagaatgattttataagaaa 25167687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 31771778 - 31771721
Alignment:
Q  171 ttacaacttatttccttaagctctccacgatatcttatgaaagcagcttatagcttat 228  Q
    ||||| ||||||||| ||||| |||||||||| | ||||||| |||||||||||||||    
T  31771778 ttacagcttatttccataagcactccacgataacatatgaaaacagcttatagcttat 31771721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 310 - 347
Target Start/End: Complemental strand, 45637982 - 45637945
Alignment:
Q  310 aggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  45637982 aggaaaatgctagatattaagaatgattttataagaaa 45637945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 343
Target Start/End: Complemental strand, 24395241 - 24395209
Alignment:
Q  311 ggaaaatgctagatatcaagaatgattttataa 343  Q
    |||||||||||||||||||||||||||||||||    
T  24395241 ggaaaatgctagatatcaagaatgattttataa 24395209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 347
Target Start/End: Complemental strand, 30848839 - 30848803
Alignment:
Q  311 ggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||||||||||||||| ||||||||||||    
T  30848839 ggaaaatgctagatatcaagaatgcttttataagaaa 30848803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 347
Target Start/End: Complemental strand, 34483108 - 34483072
Alignment:
Q  311 ggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||| ||||||||||||||||||||||||||||    
T  34483108 ggaaaatgttagatatcaagaatgattttataagaaa 34483072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 228
Target Start/End: Complemental strand, 30812193 - 30812142
Alignment:
Q  177 cttatttccttaagctctccacgatatcttatgaaagcagcttatagcttat 228  Q
    ||||||||| ||||||||||| |||| || |||||| |||||||||||||||    
T  30812193 cttatttccataagctctccatgatagctaatgaaaacagcttatagcttat 30812142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 343
Target Start/End: Original strand, 4974532 - 4974562
Alignment:
Q  313 aaaatgctagatatcaagaatgattttataa 343  Q
    |||||||||||||||||||||||||||||||    
T  4974532 aaaatgctagatatcaagaatgattttataa 4974562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 24895399 - 24895350
Alignment:
Q  179 tatttccttaagctctccacgatatcttatgaaagcagcttatagcttat 228  Q
    ||||||| |||||||||||| ||||||| ||||| || ||||||||||||    
T  24895399 tatttccataagctctccacaatatcttgtgaaaacaacttatagcttat 24895350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 24909707 - 24909658
Alignment:
Q  179 tatttccttaagctctccacgatatcttatgaaagcagcttatagcttat 228  Q
    |||||||  ||||||||||| ||||||||||||| || ||||||||||||    
T  24909707 tatttccacaagctctccacaatatcttatgaaaacaacttatagcttat 24909658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 228
Target Start/End: Complemental strand, 28165154 - 28165085
Alignment:
Q  159 ttcataaactatttacaacttatttccttaagctctccacgatatcttatgaaagcagcttatagcttat 228  Q
    ||||||| || ||| |||||||||||| ||||||||||| |||| ||||| ||  ||| |||||||||||    
T  28165154 ttcataagctgttttcaacttatttccataagctctccatgatagcttataaagacagtttatagcttat 28165085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 338
Target Start/End: Complemental strand, 15238655 - 15238627
Alignment:
Q  310 aggaaaatgctagatatcaagaatgattt 338  Q
    |||||||||||||||||||||||||||||    
T  15238655 aggaaaatgctagatatcaagaatgattt 15238627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 308 - 347
Target Start/End: Original strand, 17705261 - 17705300
Alignment:
Q  308 aaaggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  17705261 aaaggaaaatgctagatatcaagaatgattttataagaaa 17705300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 309 - 347
Target Start/End: Complemental strand, 28675420 - 28675382
Alignment:
Q  309 aaggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||||||||||||||||||||||||||||||    
T  28675420 aaggaaaatgctagatatcaagaatgattttataagaaa 28675382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 309 - 347
Target Start/End: Complemental strand, 32702477 - 32702439
Alignment:
Q  309 aaggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||||||||||||||||||||||||||||||    
T  32702477 aaggaaaatgctagatatcaagaatgattttataagaaa 32702439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 309 - 347
Target Start/End: Complemental strand, 33696969 - 33696931
Alignment:
Q  309 aaggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||||||||||||||||||||||||||||||    
T  33696969 aaggaaaatgctagatatcaagaatgattttataagaaa 33696931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 311 - 348
Target Start/End: Original strand, 33695121 - 33695158
Alignment:
Q  311 ggaaaatgctagatatcaagaatgattttataagaaat 348  Q
    ||||||||||||||||||||||||||||||||||||||    
T  33695121 ggaaaatgctagatatcaagaatgattttataagaaat 33695158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 311 - 347
Target Start/End: Original strand, 17175816 - 17175852
Alignment:
Q  311 ggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||||||||||||||||||||||||||||    
T  17175816 ggaaaatgctagatatcaagaatgattttataagaaa 17175852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 311 - 347
Target Start/End: Original strand, 18365369 - 18365405
Alignment:
Q  311 ggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||||||||||||||||||||||||||||    
T  18365369 ggaaaatgctagatatcaagaatgattttataagaaa 18365405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 311 - 347
Target Start/End: Original strand, 18370633 - 18370669
Alignment:
Q  311 ggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||||||||||||||||||||||||||||    
T  18370633 ggaaaatgctagatatcaagaatgattttataagaaa 18370669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 212
Target Start/End: Complemental strand, 2455871 - 2455820
Alignment:
Q  161 cataaactatttacaacttatttccttaagctctccacgatatcttatgaaa 212  Q
    |||||||||||| |||||||||||| ||||||||||| |||| |||||||||    
T  2455871 cataaactattttcaacttatttccataagctctccaagatagcttatgaaa 2455820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 309 - 347
Target Start/End: Original strand, 23290874 - 23290912
Alignment:
Q  309 aaggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  23290874 aaggaaaatgctagatatcaaaaatgattttataagaaa 23290912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 341
Target Start/End: Complemental strand, 29693718 - 29693686
Alignment:
Q  309 aaggaaaatgctagatatcaagaatgattttat 341  Q
    |||||||||||||||||||||||||||||||||    
T  29693718 aaggaaaatgctagatatcaagaatgattttat 29693686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 228
Target Start/End: Complemental strand, 1275194 - 1275143
Alignment:
Q  177 cttatttccttaagctctccacgatatcttatgaaagcagcttatagcttat 228  Q
    ||||||||| ||||||||||| |||| | ||||||| |||||||||||||||    
T  1275194 cttatttccataagctctccaggataacatatgaaaacagcttatagcttat 1275143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 228
Target Start/End: Complemental strand, 1401154 - 1401103
Alignment:
Q  177 cttatttccttaagctctccacgatatcttatgaaagcagcttatagcttat 228  Q
    ||||| ||| ||||||||||| |||| ||||||||| |||||||||||||||    
T  1401154 cttatctccataagctctccatgatagcttatgaaaacagcttatagcttat 1401103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 228
Target Start/End: Original strand, 3168286 - 3168337
Alignment:
Q  177 cttatttccttaagctctccacgatatcttatgaaagcagcttatagcttat 228  Q
    ||||||||||||||||||||| |||| |||| |||| ||| |||||||||||    
T  3168286 cttatttccttaagctctccaggatagcttaagaaaacagtttatagcttat 3168337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 228
Target Start/End: Original strand, 24838768 - 24838819
Alignment:
Q  177 cttatttccttaagctctccacgatatcttatgaaagcagcttatagcttat 228  Q
    ||||||||  ||||||||||| |||| ||||||||| |||||||||||||||    
T  24838768 cttatttctataagctctccatgatagcttatgaaatcagcttatagcttat 24838819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 33787772 - 33787821
Alignment:
Q  179 tatttccttaagctctccacgatatcttatgaaagcagcttatagcttat 228  Q
    ||||||| ||||||||||| |||| ||||||||| ||||||||| |||||    
T  33787772 tatttccataagctctccaagataacttatgaaaacagcttataacttat 33787821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 341
Target Start/End: Original strand, 34238883 - 34238912
Alignment:
Q  312 gaaaatgctagatatcaagaatgattttat 341  Q
    ||||||||||||||||||||||||||||||    
T  34238883 gaaaatgctagatatcaagaatgattttat 34238912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 347
Target Start/End: Original strand, 2309218 - 2309254
Alignment:
Q  311 ggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||||||||||  ||||||||||||||||    
T  2309218 ggaaaatgctagatatcaacgatgattttataagaaa 2309254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 337
Target Start/End: Original strand, 18889451 - 18889479
Alignment:
Q  309 aaggaaaatgctagatatcaagaatgatt 337  Q
    |||||||||||||||||||||||||||||    
T  18889451 aaggaaaatgctagatatcaagaatgatt 18889479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 308 - 347
Target Start/End: Complemental strand, 25398511 - 25398472
Alignment:
Q  308 aaaggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  25398511 aaaggaaaatgctagatatcaagaatgattttataagaaa 25398472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 310 - 348
Target Start/End: Original strand, 37321587 - 37321625
Alignment:
Q  310 aggaaaatgctagatatcaagaatgattttataagaaat 348  Q
    |||||||||||||||||||||||||||||||||||||||    
T  37321587 aggaaaatgctagatatcaagaatgattttataagaaat 37321625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 310 - 347
Target Start/End: Original strand, 3521801 - 3521838
Alignment:
Q  310 aggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3521801 aggaaaatgctagatatcaagaatgattttataagaaa 3521838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 310 - 347
Target Start/End: Complemental strand, 4892473 - 4892436
Alignment:
Q  310 aggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    ||||||||||||||||||||||||||||||||||||||    
T  4892473 aggaaaatgctagatatcaagaatgattttataagaaa 4892436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 311 - 347
Target Start/End: Complemental strand, 2477906 - 2477870
Alignment:
Q  311 ggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||||||||||||||||||||||||||||    
T  2477906 ggaaaatgctagatatcaagaatgattttataagaaa 2477870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 311 - 347
Target Start/End: Original strand, 6043307 - 6043343
Alignment:
Q  311 ggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||||||||||||||||||||||||||||    
T  6043307 ggaaaatgctagatatcaagaatgattttataagaaa 6043343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 311 - 347
Target Start/End: Complemental strand, 8145643 - 8145607
Alignment:
Q  311 ggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||||||||||||||||||||||||||||    
T  8145643 ggaaaatgctagatatcaagaatgattttataagaaa 8145607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 311 - 347
Target Start/End: Original strand, 33584124 - 33584160
Alignment:
Q  311 ggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||||||||||||||||||||||||||||    
T  33584124 ggaaaatgctagatatcaagaatgattttataagaaa 33584160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 312 - 347
Target Start/End: Complemental strand, 3363048 - 3363013
Alignment:
Q  312 gaaaatgctagatatcaagaatgattttataagaaa 347  Q
    ||||||||||||||||||||||||||||||||||||    
T  3363048 gaaaatgctagatatcaagaatgattttataagaaa 3363013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 314 - 347
Target Start/End: Complemental strand, 12851069 - 12851036
Alignment:
Q  314 aaatgctagatatcaagaatgattttataagaaa 347  Q
    ||||||||||||||||||||||||||||||||||    
T  12851069 aaatgctagatatcaagaatgattttataagaaa 12851036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 310 - 347
Target Start/End: Complemental strand, 14138938 - 14138901
Alignment:
Q  310 aggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  14138938 aggaaaatgctagatattaagaatgattttataagaaa 14138901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 30217126 - 30217081
Alignment:
Q  178 ttatttccttaagctctccacgatatcttatgaaagcagcttatag 223  Q
    |||||||| ||||||||||| |||| ||||||||||||||||||||    
T  30217126 ttatttccataagctctccaggatagcttatgaaagcagcttatag 30217081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 343
Target Start/End: Original strand, 38899520 - 38899552
Alignment:
Q  311 ggaaaatgctagatatcaagaatgattttataa 343  Q
    |||||||||||||||||||||||||||||||||    
T  38899520 ggaaaatgctagatatcaagaatgattttataa 38899552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 341
Target Start/End: Complemental strand, 12614517 - 12614483
Alignment:
Q  307 caaaggaaaatgctagatatcaagaatgattttat 341  Q
    ||||| |||||||||||||||||||||||||||||    
T  12614517 caaagaaaaatgctagatatcaagaatgattttat 12614483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 228
Target Start/End: Original strand, 34117571 - 34117612
Alignment:
Q  187 taagctctccacgatatcttatgaaagcagcttatagcttat 228  Q
    ||||||||||| |||| |||||||||||| ||||||||||||    
T  34117571 taagctctccaagatagcttatgaaagcaacttatagcttat 34117612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 338
Target Start/End: Original strand, 17545476 - 17545504
Alignment:
Q  310 aggaaaatgctagatatcaagaatgattt 338  Q
    |||||||||||||||||||||||||||||    
T  17545476 aggaaaatgctagatatcaagaatgattt 17545504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 18875409 - 18875361
Alignment:
Q  174 caacttatttccttaagctctccacgatatcttatgaaagcagcttata 222  Q
    |||||| ||||| ||||||||||| |||||||||| ||| |||||||||    
T  18875409 caacttgtttccataagctctccaggatatcttattaaaacagcttata 18875361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 40335899 - 40335947
Alignment:
Q  180 atttccttaagctctccacgatatcttatgaaagcagcttatagcttat 228  Q
    |||||| |||||| |||| |||| ||||||||||||||||||| |||||    
T  40335899 atttccataagctttccaagatagcttatgaaagcagcttataacttat 40335947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 308 - 347
Target Start/End: Original strand, 22426137 - 22426176
Alignment:
Q  308 aaaggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  22426137 aaaggaaaatgctagatatcaagaatgattttataagaaa 22426176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 308 - 347
Target Start/End: Complemental strand, 33114067 - 33114028
Alignment:
Q  308 aaaggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  33114067 aaaggaaaatgctagatatcaagaatgattttataagaaa 33114028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 309 - 348
Target Start/End: Complemental strand, 48161178 - 48161139
Alignment:
Q  309 aaggaaaatgctagatatcaagaatgattttataagaaat 348  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  48161178 aaggaaaatgctagatatcaagaatgattttataagaaat 48161139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 309 - 347
Target Start/End: Original strand, 3137207 - 3137245
Alignment:
Q  309 aaggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||||||||||||||||||||||||||||||    
T  3137207 aaggaaaatgctagatatcaagaatgattttataagaaa 3137245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 309 - 347
Target Start/End: Complemental strand, 3456336 - 3456298
Alignment:
Q  309 aaggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||||||||||||||||||||||||||||||    
T  3456336 aaggaaaatgctagatatcaagaatgattttataagaaa 3456298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 309 - 347
Target Start/End: Complemental strand, 6042149 - 6042111
Alignment:
Q  309 aaggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||||||||||||||||||||||||||||||    
T  6042149 aaggaaaatgctagatatcaagaatgattttataagaaa 6042111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 309 - 347
Target Start/End: Original strand, 34482681 - 34482719
Alignment:
Q  309 aaggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||||||||||||||||||||||||||||||    
T  34482681 aaggaaaatgctagatatcaagaatgattttataagaaa 34482719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 309 - 347
Target Start/End: Original strand, 37216846 - 37216884
Alignment:
Q  309 aaggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||||||||||||||||||||||||||||||    
T  37216846 aaggaaaatgctagatatcaagaatgattttataagaaa 37216884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 306 - 347
Target Start/End: Original strand, 3574316 - 3574357
Alignment:
Q  306 tcaaaggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  3574316 tcaagggaaaatgctagatatcaagaatgattttataagaaa 3574357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 311 - 347
Target Start/End: Complemental strand, 3089689 - 3089653
Alignment:
Q  311 ggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||||||||||||||||||||||||||||    
T  3089689 ggaaaatgctagatatcaagaatgattttataagaaa 3089653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 311 - 347
Target Start/End: Original strand, 19650695 - 19650731
Alignment:
Q  311 ggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||||||||||||||||||||||||||||    
T  19650695 ggaaaatgctagatatcaagaatgattttataagaaa 19650731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 311 - 347
Target Start/End: Complemental strand, 37522323 - 37522287
Alignment:
Q  311 ggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||||||||||||||||||||||||||||    
T  37522323 ggaaaatgctagatatcaagaatgattttataagaaa 37522287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 313 - 347
Target Start/End: Complemental strand, 33145980 - 33145946
Alignment:
Q  313 aaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||||||||||||||||||||||||||    
T  33145980 aaaatgctagatatcaagaatgattttataagaaa 33145946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 308 - 341
Target Start/End: Original strand, 36864824 - 36864857
Alignment:
Q  308 aaaggaaaatgctagatatcaagaatgattttat 341  Q
    ||||||||||||||||||||||||||||||||||    
T  36864824 aaaggaaaatgctagatatcaagaatgattttat 36864857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 157 - 222
Target Start/End: Original strand, 41644450 - 41644515
Alignment:
Q  157 ttttcataaactatttacaacttatttccttaagctctccacgatatcttatgaaagcagcttata 222  Q
    ||||||||| || ||| || |||||||||||||| |||| |||||| ||||||||| |||||||||    
T  41644450 ttttcataagctgttttcagcttatttccttaagatctctacgatagcttatgaaaacagcttata 41644515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 347
Target Start/End: Complemental strand, 2754989 - 2754953
Alignment:
Q  311 ggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    ||||||||||||||||||||||| |||||||||||||    
T  2754989 ggaaaatgctagatatcaagaatcattttataagaaa 2754953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 347
Target Start/End: Complemental strand, 30385670 - 30385634
Alignment:
Q  311 ggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    ||||||||||| |||||||||||||||||||||||||    
T  30385670 ggaaaatgctaaatatcaagaatgattttataagaaa 30385634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 341
Target Start/End: Complemental strand, 40328104 - 40328072
Alignment:
Q  309 aaggaaaatgctagatatcaagaatgattttat 341  Q
    |||||||||||||||||||||||||||||||||    
T  40328104 aaggaaaatgctagatatcaagaatgattttat 40328072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 347
Target Start/End: Original strand, 8320378 - 8320413
Alignment:
Q  312 gaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||||||||| |||||||||||||||||    
T  8320378 gaaaatgctagatatcaataatgattttataagaaa 8320413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 24158525 - 24158572
Alignment:
Q  174 caacttatttccttaagctctccacgatatcttatgaaagcagcttat 221  Q
    |||||||||||| ||||||||||| |||| ||||||||| ||||||||    
T  24158525 caacttatttccataagctctccaggatagcttatgaaaacagcttat 24158572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 228
Target Start/End: Original strand, 51510218 - 51510269
Alignment:
Q  177 cttatttccttaagctctccacgatatcttatgaaagcagcttatagcttat 228  Q
    ||||||||| |||||||||||||||| ||||||||| || ||||||| ||||    
T  51510218 cttatttccataagctctccacgataacttatgaaaacaacttatagtttat 51510269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 228
Target Start/End: Complemental strand, 2201191 - 2201122
Alignment:
Q  159 ttcataaactatttacaacttatttccttaagctctccacgatatcttatgaaagcagcttatagcttat 228  Q
    |||||||||| ||| || ||| ||||||||| || |||| |||| || |||||| |||||||||||||||    
T  2201191 ttcataaactcttttcagcttttttccttaaactatccaagatagctaatgaaaacagcttatagcttat 2201122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 338
Target Start/End: Original strand, 8361832 - 8361861
Alignment:
Q  309 aaggaaaatgctagatatcaagaatgattt 338  Q
    ||||||||||||||||||||||||||||||    
T  8361832 aaggaaaatgctagatatcaagaatgattt 8361861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 24280764 - 24280707
Alignment:
Q  169 atttacaacttatttccttaagctctccacgatatcttatgaaagcagcttatagctt 226  Q
    |||| |||||||||| | ||||||||||| |||| ||||||| | |||||||||||||    
T  24280764 attttcaacttattttcataagctctccatgatagcttatgacaacagcttatagctt 24280707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 24887291 - 24887359
Alignment:
Q  160 tcataaactatttacaacttatttccttaagctctccacgatatcttatgaaagcagcttatagcttat 228  Q
    |||| |||| ||| || |||||| || ||||||||||| |||| ||||||||| |||||| ||||||||    
T  24887291 tcattaactgttttcagcttattcccataagctctccaggatagcttatgaaaacagcttttagcttat 24887359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 338
Target Start/End: Complemental strand, 41224505 - 41224477
Alignment:
Q  310 aggaaaatgctagatatcaagaatgattt 338  Q
    |||||||||||||||||||||||||||||    
T  41224505 aggaaaatgctagatatcaagaatgattt 41224477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 308 - 347
Target Start/End: Complemental strand, 13355121 - 13355082
Alignment:
Q  308 aaaggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  13355121 aaaggaaaatgctagatatcaagaatgattttataagaaa 13355082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 311 - 347
Target Start/End: Original strand, 7475303 - 7475339
Alignment:
Q  311 ggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||||||||||||||||||||||||||||    
T  7475303 ggaaaatgctagatatcaagaatgattttataagaaa 7475339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 311 - 347
Target Start/End: Original strand, 9293370 - 9293406
Alignment:
Q  311 ggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||||||||||||||||||||||||||||    
T  9293370 ggaaaatgctagatatcaagaatgattttataagaaa 9293406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 311 - 347
Target Start/End: Complemental strand, 10662158 - 10662122
Alignment:
Q  311 ggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||||||||||||||||||||||||||||    
T  10662158 ggaaaatgctagatatcaagaatgattttataagaaa 10662122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 160 - 228
Target Start/End: Complemental strand, 18066190 - 18066122
Alignment:
Q  160 tcataaactatttacaacttatttccttaagctctccacgatatcttatgaaagcagcttatagcttat 228  Q
    |||||| |||||| || ||||||| |||||| |||||| |||| ||||||||| |||||||||||||||    
T  18066190 tcataagctattttcaccttattttcttaagttctccaagatagcttatgaaaacagcttatagcttat 18066122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 311 - 347
Target Start/End: Original strand, 23267857 - 23267893
Alignment:
Q  311 ggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||||||||||||||||||||||||||||    
T  23267857 ggaaaatgctagatatcaagaatgattttataagaaa 23267893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 311 - 347
Target Start/End: Complemental strand, 33380477 - 33380441
Alignment:
Q  311 ggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||||||||||||||||||||||||||||    
T  33380477 ggaaaatgctagatatcaagaatgattttataagaaa 33380441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 311 - 347
Target Start/End: Complemental strand, 35161029 - 35160993
Alignment:
Q  311 ggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||||||||||||||||||||||||||||    
T  35161029 ggaaaatgctagatatcaagaatgattttataagaaa 35160993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 228
Target Start/End: Original strand, 18179255 - 18179316
Alignment:
Q  167 ctatttacaacttatttccttaagctctccacgatatcttatgaaagcagcttatagcttat 228  Q
    |||||| || ||||||| | |||| |||||| |||| |||||||||||||||||||||||||    
T  18179255 ctattttcagcttattttcgtaagttctccaggatagcttatgaaagcagcttatagcttat 18179316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 308 - 341
Target Start/End: Complemental strand, 22592986 - 22592953
Alignment:
Q  308 aaaggaaaatgctagatatcaagaatgattttat 341  Q
    ||||||||||||||||||||||||||||||||||    
T  22592986 aaaggaaaatgctagatatcaagaatgattttat 22592953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 314 - 347
Target Start/End: Original strand, 31174633 - 31174666
Alignment:
Q  314 aaatgctagatatcaagaatgattttataagaaa 347  Q
    ||||||||||||||||||||||||||||||||||    
T  31174633 aaatgctagatatcaagaatgattttataagaaa 31174666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 347
Target Start/End: Complemental strand, 3989342 - 3989310
Alignment:
Q  315 aatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||||||||||||||||||||||||    
T  3989342 aatgctagatatcaagaatgattttataagaaa 3989310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 347
Target Start/End: Complemental strand, 39819317 - 39819281
Alignment:
Q  311 ggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||| ||||||||||||||||||||||||||||    
T  39819317 ggaaaatgttagatatcaagaatgattttataagaaa 39819281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 339
Target Start/End: Original strand, 34320961 - 34320991
Alignment:
Q  309 aaggaaaatgctagatatcaagaatgatttt 339  Q
    |||||||||||||||||||||||||||||||    
T  34320961 aaggaaaatgctagatatcaagaatgatttt 34320991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 36863635 - 36863685
Alignment:
Q  162 ataaactatttacaacttatttccttaagctctccacgatatcttatgaaa 212  Q
    ||||||||||| |||||||||| | ||||||||||| |||| |||||||||    
T  36863635 ataaactatttccaacttattttcataagctctccaagatagcttatgaaa 36863685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 239
Target Start/End: Complemental strand, 36852532 - 36852455
Alignment:
Q  162 ataaactatttacaacttatttccttaagctctccacgatatcttatgaaagcagcttatagcttatgtatcaaaaca 239  Q
    ||||||||||| ||  |||||||| ||||||||||| |||| ||||||||| ||| ||||| || || ||| ||||||    
T  36852532 ataaactattttcagattatttccataagctctccaagatagcttatgaaaacagtttatacctcatatataaaaaca 36852455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 341
Target Start/End: Complemental strand, 27847833 - 27847801
Alignment:
Q  309 aaggaaaatgctagatatcaagaatgattttat 341  Q
    ||||||||||||||||||||||||| |||||||    
T  27847833 aaggaaaatgctagatatcaagaataattttat 27847801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 43205367 - 43205303
Alignment:
Q  164 aaactatttacaacttatttccttaagctctccacgatatcttatgaaagcagcttatagcttat 228  Q
    ||||| ||| |||||||||||| ||||||||||  |||| ||||||||| ||| ||||| |||||    
T  43205367 aaactgttttcaacttatttccataagctctccgtgatagcttatgaaaacagattatatcttat 43205303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 338
Target Start/End: Complemental strand, 43331183 - 43331155
Alignment:
Q  310 aggaaaatgctagatatcaagaatgattt 338  Q
    |||||||||||||||||||||||||||||    
T  43331183 aggaaaatgctagatatcaagaatgattt 43331155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 308 - 347
Target Start/End: Original strand, 20304922 - 20304961
Alignment:
Q  308 aaaggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  20304922 aaaggaaaatgctagatatcaagaatgattttataagaaa 20304961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 308 - 347
Target Start/End: Original strand, 41876234 - 41876273
Alignment:
Q  308 aaaggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  41876234 aaaggaaaatgctagatatcaagaatgattttataagaaa 41876273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 308 - 347
Target Start/End: Complemental strand, 51737778 - 51737739
Alignment:
Q  308 aaaggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  51737778 aaaggaaaatgctagatatcaagaatgattttataagaaa 51737739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 309 - 347
Target Start/End: Complemental strand, 18404720 - 18404682
Alignment:
Q  309 aaggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||||||||||||||||||||||||||||||    
T  18404720 aaggaaaatgctagatatcaagaatgattttataagaaa 18404682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 309 - 347
Target Start/End: Original strand, 36966501 - 36966539
Alignment:
Q  309 aaggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||||||||||||||||||||||||||||||    
T  36966501 aaggaaaatgctagatatcaagaatgattttataagaaa 36966539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 311 - 347
Target Start/End: Complemental strand, 3559887 - 3559851
Alignment:
Q  311 ggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||||||||||||||||||||||||||||    
T  3559887 ggaaaatgctagatatcaagaatgattttataagaaa 3559851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 311 - 347
Target Start/End: Complemental strand, 6883757 - 6883721
Alignment:
Q  311 ggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||||||||||||||||||||||||||||    
T  6883757 ggaaaatgctagatatcaagaatgattttataagaaa 6883721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 311 - 347
Target Start/End: Complemental strand, 25463946 - 25463910
Alignment:
Q  311 ggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||||||||||||||||||||||||||||    
T  25463946 ggaaaatgctagatatcaagaatgattttataagaaa 25463910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 311 - 347
Target Start/End: Complemental strand, 25973677 - 25973641
Alignment:
Q  311 ggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||||||||||||||||||||||||||||    
T  25973677 ggaaaatgctagatatcaagaatgattttataagaaa 25973641  T

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Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 311 - 347
Target Start/End: Original strand, 37821629 - 37821665
Alignment:
Q  311 ggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||||||||||||||||||||||||||||    
T  37821629 ggaaaatgctagatatcaagaatgattttataagaaa 37821665  T

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Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 312 - 347
Target Start/End: Complemental strand, 40215257 - 40215222
Alignment:
Q  312 gaaaatgctagatatcaagaatgattttataagaaa 347  Q
    ||||||||||||||||||||||||||||||||||||    
T  40215257 gaaaatgctagatatcaagaatgattttataagaaa 40215222  T

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Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 309 - 347
Target Start/End: Complemental strand, 44094969 - 44094931
Alignment:
Q  309 aaggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  44094969 aaggaaaatgctagatatcaagaattattttataagaaa 44094931  T

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Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 310 - 347
Target Start/End: Complemental strand, 19015675 - 19015638
Alignment:
Q  310 aggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||| |||||||||||||||||||||||||    
T  19015675 aggaaaatgctacatatcaagaatgattttataagaaa 19015638  T

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Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 228
Target Start/End: Original strand, 28482240 - 28482309
Alignment:
Q  159 ttcataaactatttacaacttatttccttaagctctccacgatatcttatgaaagcagcttatagcttat 228  Q
    ||||||||||||||  | ||||||| | ||||||||||| |||| ||||| ||| |||||||||||||||    
T  28482240 ttcataaactatttttagcttattttcgtaagctctccaagataacttataaaaacagcttatagcttat 28482309  T

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Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 347
Target Start/End: Original strand, 9910086 - 9910122
Alignment:
Q  311 ggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||| ||||||||||||||||||||||||||||    
T  9910086 ggaaaatgttagatatcaagaatgattttataagaaa 9910122  T

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Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 347
Target Start/End: Original strand, 19722894 - 19722930
Alignment:
Q  311 ggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||| ||||||||||||||||||||||||||||    
T  19722894 ggaaaatgttagatatcaagaatgattttataagaaa 19722930  T

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Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 338
Target Start/End: Original strand, 33786422 - 33786453
Alignment:
Q  307 caaaggaaaatgctagatatcaagaatgattt 338  Q
    ||||||||||||||||||||||||||||||||    
T  33786422 caaaggaaaatgctagatatcaagaatgattt 33786453  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 228
Target Start/End: Complemental strand, 15515596 - 15515535
Alignment:
Q  167 ctatttacaacttatttccttaagctctccacgatatcttatgaaagcagcttatagcttat 228  Q
    |||||| ||| |||||||| |||||| |||| |||| ||||||||| || ||||||||||||    
T  15515596 ctattttcaatttatttccataagctatccatgataacttatgaaaacaacttatagcttat 15515535  T

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Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 37811915 - 37811854
Alignment:
Q  159 ttcataaactatttacaacttatttccttaagctctccacgatatcttatgaaagcagctta 220  Q
    |||||||||| ||| |||||||||||| | ||||||||| |||  ||||||||| |||||||    
T  37811915 ttcataaactgttttcaacttatttccattagctctccatgatggcttatgaaaacagctta 37811854  T

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Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 35017630 - 35017570
Alignment:
Q  168 tatttacaacttatttccttaagctctccacgatatcttatgaaagcagcttatagcttat 228  Q
    ||||| |||||||||||| ||||||||||| || | ||||||||| |||| ||||| ||||    
T  35017630 tattttcaacttatttccataagctctccaggacagcttatgaaaacagcatatagattat 35017570  T

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Target: scaffold0204 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 311 - 347
Target Start/End: Complemental strand, 4666 - 4630
Alignment:
Q  311 ggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||||||||||||||||||||||||||||    
T  4666 ggaaaatgctagatatcaagaatgattttataagaaa 4630  T

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Target: scaffold0096 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 311 - 347
Target Start/End: Complemental strand, 41280 - 41244
Alignment:
Q  311 ggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||||||||||||||||||||||||||||    
T  41280 ggaaaatgctagatatcaagaatgattttataagaaa 41244  T

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Target: scaffold0085 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 311 - 347
Target Start/End: Complemental strand, 48119 - 48083
Alignment:
Q  311 ggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||||||||||||||||||||||||||||    
T  48119 ggaaaatgctagatatcaagaatgattttataagaaa 48083  T

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Target: scaffold0471 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 313 - 347
Target Start/End: Complemental strand, 13110 - 13076
Alignment:
Q  313 aaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||||||||||||||||||||||||||||||    
T  13110 aaaatgctagatatcaagaatgattttataagaaa 13076  T

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Target: scaffold0178 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 347
Target Start/End: Complemental strand, 11891 - 11855
Alignment:
Q  311 ggaaaatgctagatatcaagaatgattttataagaaa 347  Q
    |||||||| ||||||||||||||||||||||||||||    
T  11891 ggaaaatgttagatatcaagaatgattttataagaaa 11855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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