View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8875_low_4 (Length: 327)
Name: NF8875_low_4
Description: NF8875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8875_low_4 |
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| [»] scaffold0045 (3 HSPs) |
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| [»] scaffold0457 (1 HSPs) |
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Alignment Details
Target: scaffold0045 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 31766 - 32057
Alignment:
| Q |
18 |
attttaatatcatacctttgttctaattttatcaaatcatcaaattcatatagtttaaactttatctcaaccatggaatgatatattatgtggaatttct |
117 |
Q |
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| T |
31766 |
attttaatatcatacctttgttctaatttcatcaaatcatcaa-ttcatatagtttaaactttatctcaaccatggaatgatatattatgtggaatttct |
31864 |
T |
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| Q |
118 |
cattaagcacttaggaatctaatttattaaatattatatgcagctgtcatttgagaacattgggaaattatttatgggcaaggagccaggcccttttcta |
217 |
Q |
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| T |
31865 |
cattaagcacttaggaatctaaattattaaatattatatgcagctgtcatttgagaacattgggaaattatttatgggcaaggagccaggcccttttcta |
31964 |
T |
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| Q |
218 |
aattccttggataagctctatcaaggcttgcttccaggtgtgagagcctatccacttaacattcctggttttgcataccaccatgctcttcag |
310 |
Q |
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| T |
31965 |
aattccttggataagctctatcaaggcttgcttccaggtgtgagagcctatccacttaacattcctggttttgcataccaccatgctcttcag |
32057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 65 - 307
Target Start/End: Original strand, 39463 - 39706
Alignment:
| Q |
65 |
atatagtttaaactttatctcaaccatggaatgatatattatg-tggaatttctcattaagcacttaggaatctaatttattaaatattatatgcagctg |
163 |
Q |
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| T |
39463 |
atatagtattaattttatctctaccatgcaatgatatattaacatggaatttctcattaagcacatatggatctaaattattaaatattaaatgcagctc |
39562 |
T |
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| Q |
164 |
tcatttgagaacattgggaaattatttatgggcaaggagccaggcccttttctaaattccttggataagctctatcaaggcttgcttccaggtgtgagag |
263 |
Q |
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| T |
39563 |
acatttgacaacattgggaaattattcttaagcaaggaaccaggcccttttttaaattccttggataagctctatgaaggcatggttccaggactacgag |
39662 |
T |
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| Q |
264 |
cctatccacttaacattcctggttttgcataccaccatgctctt |
307 |
Q |
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| T |
39663 |
cctatccacttaatattcctggttttgcataccaccatgctctt |
39706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 139 - 310
Target Start/End: Original strand, 24908 - 25079
Alignment:
| Q |
139 |
atttattaaatattatatgcagctgtcatttgagaacattgggaaattatttatgggcaaggagccaggcccttttctaaattccttggataagctctat |
238 |
Q |
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| T |
24908 |
atttatgaaatattaaatgtagatgacatttgagaacattgggaaattattctttagcaaagagccaggcccttttctaaattccttggataaactctat |
25007 |
T |
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| Q |
239 |
caaggcttgcttccaggtgtgagagcctatccacttaacattcctggttttgcataccaccatgctcttcag |
310 |
Q |
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| T |
25008 |
caagacttgcttctaggagtgagagcctatccaattaacattcctggttttgcataccaccatgctcttcag |
25079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0457 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: scaffold0457
Description:
Target: scaffold0457; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 139 - 310
Target Start/End: Complemental strand, 5260 - 5089
Alignment:
| Q |
139 |
atttattaaatattatatgcagctgtcatttgagaacattgggaaattatttatgggcaaggagccaggcccttttctaaattccttggataagctctat |
238 |
Q |
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| T |
5260 |
atttatgaaatattaaatgtagatgacatttgagaacattggaaaattattctttagcaaggagccaggtccttttctacattccttggataaactctat |
5161 |
T |
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| Q |
239 |
caaggcttgcttccaggtgtgagagcctatccacttaacattcctggttttgcataccaccatgctcttcag |
310 |
Q |
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| T |
5160 |
caagacttgcttctaggagtgagagcctatccaattaacattcctggttttgcataccaccatgctcttcag |
5089 |
T |
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