View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8875_low_6 (Length: 260)
Name: NF8875_low_6
Description: NF8875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8875_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 17 - 252
Target Start/End: Original strand, 14726253 - 14726488
Alignment:
| Q |
17 |
aagaacgtacagcaggaccatatcaattatatcatattcgacagcagtcggtatttgacaaccaatacatgcccagcgtcactatatgatagaaaggcat |
116 |
Q |
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| T |
14726253 |
aagaacgtacagcaggaccatatcaattatatcatattcgacagcagtcggtatttgacaaccaatacatgcccagcgtcactatatgatagaaaggcat |
14726352 |
T |
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| Q |
117 |
caattctgatctctatagtaccgacatttctgaacgtgtcagatatccgacaccaacacaaaaccatcacattcaaccaaaactaggcctctgcaaacca |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
14726353 |
caattctgatctctatagtaccgacatttctgaacgtgtcagatatccgacaccaacacaaaaccttcacattcaaccaaaactaggcctctgcaaacca |
14726452 |
T |
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| Q |
217 |
aaaagactcccacctacccacaaacacaggaacacc |
252 |
Q |
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| T |
14726453 |
aaaagactcccacctacccacaaacacagtaacacc |
14726488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 20 - 252
Target Start/End: Complemental strand, 17597254 - 17597022
Alignment:
| Q |
20 |
aacgtacagcaggaccatatcaattatatcatattcgacagcagtcggtatttgacaaccaatacatgcccagcgtcactatatgatagaaaggcatcaa |
119 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
17597254 |
aacgtacaacaggaccatatcaattatatcatattcgacagcagtcggtatttgacaaccaatacatgcccagcgtcactatatgatagaaaggcgtcaa |
17597155 |
T |
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| Q |
120 |
ttctgatctctatagtaccgacatttctgaacgtgtcagatatccgacaccaacacaaaaccatcacattcaaccaaaactaggcctctgcaaaccaaaa |
219 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
17597154 |
ttatgatctctatagtaccgacatttctgaacgtgtcagatatccgacaccaacacaaaaccgtcacattcaaccaaaactaggcctctgcaaaccaaaa |
17597055 |
T |
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| Q |
220 |
agactcccacctacccacaaacacaggaacacc |
252 |
Q |
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|||||||||||||||||||||||||| |||||| |
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| T |
17597054 |
agactcccacctacccacaaacacagaaacacc |
17597022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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