View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8875_low_8 (Length: 246)
Name: NF8875_low_8
Description: NF8875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8875_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 12 - 230
Target Start/End: Original strand, 44063725 - 44063941
Alignment:
| Q |
12 |
agagacgggtctagatcagggatgaagtttggatgagatgaaataagagaagcctt---agaatagagaaaatgaaggataagttcttcatctgttggag |
108 |
Q |
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| T |
44063725 |
agagacgggtctagatcagggatgaagtttggatgagatgaaataagagaagccttcttagaatagagaaaatgaaggataagttcttcatctgttggag |
44063824 |
T |
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| Q |
109 |
agaagacaaacccaggaggaagcttgacaatatctcccattcaattcaatgatatattttaatagagtttattaagttgtaaactttggcactcattaca |
208 |
Q |
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| T |
44063825 |
agaagacaaatccaggaggaagcttgacagtatctccc-----attcaatgatatattttaatagagtttattaagttgtaaactttggcactcattaca |
44063919 |
T |
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| Q |
209 |
attaattttgtcactatatata |
230 |
Q |
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| T |
44063920 |
attaattttgtcactatatata |
44063941 |
T |
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Back To:
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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 133
Target Start/End: Original strand, 39242608 - 39242682
Alignment:
| Q |
59 |
agaagccttagaatagagaaaatgaaggataagttcttcatctgttggagagaagacaaacccaggaggaagctt |
133 |
Q |
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| T |
39242608 |
agaagccttggaatagagaaaatgaaggactagttcttcgtctgttggagaaaagtaaaacccaggtggaagctt |
39242682 |
T |
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