View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8876_high_4 (Length: 301)
Name: NF8876_high_4
Description: NF8876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8876_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 293
Target Start/End: Original strand, 13869336 - 13869610
Alignment:
| Q |
19 |
aacctatttattgaatcatattaatcaatcttatgcactaaactgtgattttgtcactaaatatgtgatacattgtcagtatagtatctgaacgtaccaa |
118 |
Q |
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| T |
13869336 |
aacctatttattgaatcatattaatcaatcttatgcactaagctgtgattttgtcactaaatatgtgatacattgtcagtatagtatctgaacgtaccaa |
13869435 |
T |
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| Q |
119 |
aatcattcacacaccccctcgagtgtctctttaattaaccattttagtcatagaatgtgttggatcctcaaatatttttgcatcaataaaattacaaaca |
218 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13869436 |
aatcattcacacaccc--tcgagtgtctctttaattaaccattttagtcatagaatgtgttggatcctcaaatatttttgcatcaataaaattacaaaca |
13869533 |
T |
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| Q |
219 |
aaaaagacaatggggtttataatgaata--tctctcttatatgcttcacaaatcctagttgtcacctctttcttctc |
293 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13869534 |
aaaaagacaatggggtttataatgaatatctctctcttatatgcttcacaaatcctagttgtcacctctttcttctc |
13869610 |
T |
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