View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8876_high_5 (Length: 239)
Name: NF8876_high_5
Description: NF8876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8876_high_5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 4528455 - 4528228
Alignment:
| Q |
18 |
agtaatcattcgttcggaaggaatggtggtgctag------atctggtgaacatgaactatttcctgtggatcttacttcatgtaagtccaaaccaaatc |
111 |
Q |
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| T |
4528455 |
agtactcattcgttcggaaggaatggtggtgctagtgctagatctggtgaacatgaactatttcctgtggatcttacttcatgtaagtccaaaccaaatc |
4528356 |
T |
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| Q |
112 |
ttaatgaagttggtgaaggaagccaatctgattctggaaattctccacctaggaatttgtctagtgaatcaaatcatggttggtcttaccctacaacaat |
211 |
Q |
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| T |
4528355 |
ttaatgaagttggtgaaggaagccaatctgattctggaaattctccacctaggaatttgtctagtgaatcaaatcatggttggtcttaccctacaacaat |
4528256 |
T |
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| Q |
212 |
tcaaaagagaaacaatggctattcaccc |
239 |
Q |
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| T |
4528255 |
tcaaaagagaaacaatggctattcaccc |
4528228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 108 - 238
Target Start/End: Complemental strand, 16994667 - 16994537
Alignment:
| Q |
108 |
aatcttaatgaagttggtgaaggaagccaatctgattctggaaattctccacctaggaatttgtctagtgaatcaaatcatggttggtcttaccctacaa |
207 |
Q |
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| T |
16994667 |
aatcttaaagaagttggggatggaagccaatctgatcctgaaaattctccatctaggagtttggctagtgaatccaatcatggttggtcttaccctgcca |
16994568 |
T |
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| Q |
208 |
caattcaaaagagaaacaatggctattcacc |
238 |
Q |
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| T |
16994567 |
atattcaaaagagaaacaatggttatccacc |
16994537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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