View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8876_low_1 (Length: 398)
Name: NF8876_low_1
Description: NF8876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8876_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 110 - 388
Target Start/End: Original strand, 44853803 - 44854081
Alignment:
| Q |
110 |
taccgaattgaaaggaaggaaaaggaggagaatcaagctgaagccacatattcttccccttccggcgagctgcaacaatcttcttcccaacaacggaagc |
209 |
Q |
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| T |
44853803 |
taccgaattgaaaggaaggaaaaggaggagaatcaagctgaagccacatattcttccccttccggcgagctgcaacaatcttcttcccaacaacggaagc |
44853902 |
T |
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| Q |
210 |
ttcgaactcttcgcgagagacaccgtcgatgactttgttatcatcggcaacgatgcatttggttatcttctttccgatacagttctcttccgccgctctt |
309 |
Q |
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| T |
44853903 |
ttcgaactcttcgcgagagacaccgtcgatgactttgttatcatcggcgacgatgcatttggttatcttctttccgatacagttctcttccaccgctctt |
44854002 |
T |
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| Q |
310 |
ctcgccgcctctacctccggtagctccggcattatgctcggtcgtgactgtgatggagttttcccgcgttgcttctctg |
388 |
Q |
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| T |
44854003 |
ctcgccgcctctacctccggtagctccggcattatgctcggtcgtgactgtgatggagttttcccgcgttgcttctctg |
44854081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 44853697 - 44853758
Alignment:
| Q |
20 |
atacctaacacagtcacaatcataaatcgtaagaaactcgtaagctagggtttcaaaaggta |
81 |
Q |
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| T |
44853697 |
atacctaacacagtcacaatcataaatcgtaagaaactcgtaagctagggtttcaaaaggta |
44853758 |
T |
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