View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8876_low_2 (Length: 351)
Name: NF8876_low_2
Description: NF8876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8876_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 23 - 332
Target Start/End: Original strand, 24041079 - 24041389
Alignment:
| Q |
23 |
ttggtgttccatctatctgtgtacattcgttactcttttccatatnnnnnnn-ttacaaaacttagaatggaaaatagtaaattaatggggtttgcaaga |
121 |
Q |
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| T |
24041079 |
ttggtgttccatctatctgtgtacattcgttactcttttccatataaaaaaaattacaaaacttagaatggaaaatagtaaattaatggggtttgcaaga |
24041178 |
T |
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| Q |
122 |
gttgtttgattgcgttgaaaagtaaatggatggtgtgattgaggatcttagtggtgatacggattcttcggttactcttaacctatttgttggtttaatt |
221 |
Q |
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| T |
24041179 |
gttgtttgattgcgttgaaaagtaaatggatggtgtgattcaggatcttagtggtgataccgattcttcggttactctcaacctatttgttggtttaatt |
24041278 |
T |
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| Q |
222 |
caaactactacttatgacctaagcactaaataaacgatagttaaccttatgggatgaagattcacatccctccatatgtcatgttgctcctcatcactca |
321 |
Q |
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| T |
24041279 |
caaactactacttatgacctaagcactatataaacgatagttaatctcatgggatgaagattcacatccctccatatgtcatgttgctcctcatcactca |
24041378 |
T |
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| Q |
322 |
agggaggtata |
332 |
Q |
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| T |
24041379 |
agggaggtata |
24041389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 318
Target Start/End: Complemental strand, 9804466 - 9804434
Alignment:
| Q |
286 |
catccctccatatgtcatgttgctcctcatcac |
318 |
Q |
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||||| ||||||||||||||||||||||||||| |
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| T |
9804466 |
catccatccatatgtcatgttgctcctcatcac |
9804434 |
T |
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