View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8876_low_5 (Length: 278)
Name: NF8876_low_5
Description: NF8876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8876_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 45310971 - 45311226
Alignment:
| Q |
1 |
tgttgtttaaacttttttagtatagtg----tatctactatgaaaatgtctttctctaatgacgcgtgacgtaacagaatttcaaacatttgttttatgt |
96 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45310971 |
tgttgtttaaacttttttagtatagtgagtgtatctactatgaaaatgtctttctctaatgacgcgtgacgtaacagaatttcaaacatttgttttatgt |
45311070 |
T |
|
| Q |
97 |
ttgcatttgtattaattaattgctattttgtctttatggaataatacataacaaaacttatgnnnnnnnnnnnnnatggacagctcccgaacgttgtggg |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
45311071 |
ttgcatttgtattaattaattgctattttgtctttatggaataatacataacaaaacttatgtttttttttttttatggacagctcccgaacgttgtggg |
45311170 |
T |
|
| Q |
197 |
gttaacatttggaatagttcagatcacactctatgcaatgtacagaaacaccaaac |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
45311171 |
gttaacatttggaatagttcagatcacactctatgcaatgtacagaaacagcaaac |
45311226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University