View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8877_high_5 (Length: 346)
Name: NF8877_high_5
Description: NF8877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8877_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 13 - 334
Target Start/End: Complemental strand, 24362420 - 24362099
Alignment:
| Q |
13 |
ttttcaatttcaagtctagcttttattaaacaacatcaagtaactaagtaagatgaaatgtttggcaccatgaaattgaatgttaatataatgaaagaag |
112 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24362420 |
ttttcaatttcaagtctagcgtttattaaaaaacatcaagtaactaagtaagatgaaatgtttggcaccatgaaattgaatgttaatataatgaaagaag |
24362321 |
T |
|
| Q |
113 |
aaacagaaaatgaaagccatacctctaactttcttacgttgtcgaggggaatctaatggtggcctccttccagtcttctgatttggccattcatccaaaa |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
24362320 |
aaacagaaaatgaaagccatacctctaactttcttacgtggtcgaggggaatctaatggtggcctccttccagtcttttgatttggccattcatccaaaa |
24362221 |
T |
|
| Q |
213 |
tttgacatgattcatcatcactatgatcaacattttcatcatagtctatttctactgcattcttgccaagtatgtgtacaaggaacttagaagttccttc |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24362220 |
tttgacatgattcatcatcactatgatcaacattttcatcatagtctatttctactgcattcttgccaagtatgtgtacaaggaacttagaagttccttc |
24362121 |
T |
|
| Q |
313 |
ttcatatttaaacaacaccaaa |
334 |
Q |
| |
|
|||||| ||||||||||||||| |
|
|
| T |
24362120 |
ttcataattaaacaacaccaaa |
24362099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 250 - 292
Target Start/End: Complemental strand, 24354827 - 24354785
Alignment:
| Q |
250 |
atcatagtctatttctactgcattcttgccaagtatgtgtaca |
292 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
24354827 |
atcatagtctatttctactgcattctggccaagtatgtgtaca |
24354785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 251
Target Start/End: Complemental strand, 24344646 - 24344581
Alignment:
| Q |
186 |
tcttctgatttggccattcatccaaaatttgacatgattcatcatcactatgatcaacattttcat |
251 |
Q |
| |
|
|||||||||||||||||||||| ||||| | | ||||||||||||||||||| ||||||| |||| |
|
|
| T |
24344646 |
tcttctgatttggccattcatctaaaatctcaactgattcatcatcactatgaccaacattgtcat |
24344581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 250 - 285
Target Start/End: Complemental strand, 24369842 - 24369807
Alignment:
| Q |
250 |
atcatagtctatttctactgcattcttgccaagtat |
285 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |
|
|
| T |
24369842 |
atcatagtctatttctaatgcattcttgccaagtat |
24369807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University