View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8877_low_2 (Length: 452)
Name: NF8877_low_2
Description: NF8877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8877_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 410; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Complemental strand, 1355664 - 1355231
Alignment:
| Q |
1 |
aaaataaaaccttttattgcaaaacaaaaatcacaataaatatattgattatgagaagaagggaaacacatgatacaaaattactagtctacttagttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1355664 |
aaaataaaaccttttattgcaaaacaaaaatcacaataaatatattgattatgagaagaagggaaacacatgatacaaaattactagtctacttagttgt |
1355565 |
T |
|
| Q |
101 |
tggaattggaaggaaccctatacttgtaaagagcagcaataaagtcatcaatatattgattgtgaatatcttttgaactgaaaaccttccccaactcttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1355564 |
tggaattggaaggaaccctatacttgtaaagagcagcaataaagtcatcaatatattgattgtgaatatcttttgaactgaaaaccttccccaactcttt |
1355465 |
T |
|
| Q |
201 |
tgcattgttcctgaaactacttccttcctcatccacaattgccaacctcaatgagtgagccacagagtccctagtaaaagacccatcttcctcactcctt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1355464 |
agcattgttcctgaaactacttccttcctcatccacaattgccaacctcaatgagtgagccacagagtccctagtaaaagacccatcttcctcactcctt |
1355365 |
T |
|
| Q |
301 |
ggtacctcaacagccactcccttttccaccaatgcccttgaaaacaaacattggtcaagcaaataaggcagtgtcacaaggacatggccaaaatgaacct |
400 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1355364 |
ggtacttcaacagccacttccttttccaccaatgcccttgaaaacaaacactggtcaagcaaataaggcagtgtcacaagaacatggccaaaatgaacct |
1355265 |
T |
|
| Q |
401 |
tttcaataacagaaccagaaccacagtgactcat |
434 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |
|
|
| T |
1355264 |
tttcaataacagaaccagaaccacaatgactcat |
1355231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 86 - 434
Target Start/End: Complemental strand, 1362465 - 1362117
Alignment:
| Q |
86 |
agtctacttagttgttggaattggaaggaaccctatacttgtaaagagcagcaataaagtcatcaatatattgattgtgaatatcttttgaactgaaaac |
185 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1362465 |
agtctacctagttgttggaattggaaggattcctatacttgtaaagagcagcaatgagatcatcaatatattgattatgaatatcttttgaactgaaaac |
1362366 |
T |
|
| Q |
186 |
cttccccaactcttttgcattgttcctgaaactacttccttcctcatccacaattgccaacctcaatgagtgagccacagagtccctagtaaaagaccca |
285 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1362365 |
tttccccaactctttagcattgttcctgaaactacttccttcctcatccacaattgccaacctcaatgagtgagccacagagtccctagtaaaagaccca |
1362266 |
T |
|
| Q |
286 |
tcttcctcactccttggtacctcaacagccactcccttttccaccaatgcccttgaaaacaaacattggtcaagcaaataaggcagtgtcacaaggacat |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1362265 |
tcttcctcactccttggtacctcaacagccactcccttttccaccaatgcccttgaaaacaaacattggtcaagcaaataaggcagtgtcacaagaacat |
1362166 |
T |
|
| Q |
386 |
ggccaaaatgaaccttttcaataacagaaccagaaccacagtgactcat |
434 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1362165 |
ggccgaaatgaaccttctcaataacagaaccagaaccacagtgactcat |
1362117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 154 - 434
Target Start/End: Complemental strand, 20493182 - 20492902
Alignment:
| Q |
154 |
tattgattgtgaatatcttttgaactgaaaaccttccccaactcttttgcattgttcctgaaactacttccttcctcatccacaattgccaacctcaatg |
253 |
Q |
| |
|
|||| |||||||| ||||||||||| ||||| ||| |||| ||||| ||||| || || | ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
20493182 |
tattcattgtgaagatcttttgaaccgaaaatctttcccatatctttggcattttttctatagatacttccttcctcatccactattgccaacctcaatg |
20493083 |
T |
|
| Q |
254 |
agtgagccacagagtccctagtaaaagacccatcttcctcactccttggtacctcaacagccactcccttttccaccaatgcccttgaaaacaaacattg |
353 |
Q |
| |
|
| || | ||||||||||||||| |||||||||| |||| ||||||||||||||| ||||| | | |||| | | | | ||||||||||||||||| |
|
|
| T |
20493082 |
ttttggctatagagtccctagtaaaggacccatcttgctcattccttggtacctcaatagccaatttcctttcttctagttctcttgaaaacaaacattg |
20492983 |
T |
|
| Q |
354 |
gtcaagcaaataaggcagtgtcacaaggacatggccaaaatgaaccttttcaataacagaaccagaaccacagtgactcat |
434 |
Q |
| |
|
|||| |||||||||| ||||||||| ||||| |||||||||| ||| ||||| || ||||| |||||||| |||||||| |
|
|
| T |
20492982 |
atcaattaaataaggcaatgtcacaagtacatgcccaaaatgaagcttctcaatgactgaacctgaaccacaatgactcat |
20492902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 105 - 434
Target Start/End: Complemental strand, 11532409 - 11532080
Alignment:
| Q |
105 |
attggaaggaaccctatacttgtaaagagcagcaataaagtcatcaatatattgattgtgaatatcttttgaactgaaaaccttccccaactcttttgca |
204 |
Q |
| |
|
||||||| |||| |||||||| | ||||||| ||||||| || ||||| ||||||||||||| ||||||||||||||||||||| |||| ||||| ||| |
|
|
| T |
11532409 |
attggaatgaactctatacttttgaagagcaacaataaaatcttcaatgtattgattgtgaagatcttttgaactgaaaacctttcccatatctttggca |
11532310 |
T |
|
| Q |
205 |
ttgttcctgaaactacttccttcctcatccacaattgccaacctcaatgagtgagccacagagtccctagtaaaagacccatcttcctcactccttggta |
304 |
Q |
| |
|
||||| ||| | |||||||||||||||||| ||| |||||||||||| | || || |||||||||||||| ||||| |||| |||||||||||||| |
|
|
| T |
11532309 |
ttgtttctgtacgtacttccttcctcatccattattaccaacctcaatgttttggctactgagtccctagtaaaggacccgtctttctcactccttggta |
11532210 |
T |
|
| Q |
305 |
cctcaacagccactcccttttccaccaatgcccttgaaaacaaacattggtcaagcaaataaggcagtgtcacaaggacatggccaaaatgaaccttttc |
404 |
Q |
| |
|
|||||| ||||||| |||||| | | | | ||||| |||||||||||||||| |||||||||| ||||||||| |||| |||||||||| ||| || |
|
|
| T |
11532209 |
cctcaatagccactttcttttcttctagtactcttgagaacaaacattggtcaattaaataaggcaatgtcacaagagcatgcccaaaatgaagcttctc |
11532110 |
T |
|
| Q |
405 |
aataacagaaccagaaccacagtgactcat |
434 |
Q |
| |
|
||| || ||||| ||||||||||||||||| |
|
|
| T |
11532109 |
aatgactgaacctgaaccacagtgactcat |
11532080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 113 - 434
Target Start/End: Complemental strand, 29955088 - 29954767
Alignment:
| Q |
113 |
gaaccctatacttgtaaagagcagcaataaagtcatcaatatattgattgtgaatatcttttgaactgaaaaccttccccaactcttttgcattgttcct |
212 |
Q |
| |
|
|||| |||||||| | |||||||||||| | || | ||| |||| |||||||| ||||||||||||||||||||| ||| ||||| ||||| |||| |
|
|
| T |
29955088 |
gaactctatacttttgaagagcagcaatgacatctttaatgtattcattgtgaagatcttttgaactgaaaaccttttccatatctttggcattattcc- |
29954990 |
T |
|
| Q |
213 |
gaaac-tacttccttcctcatccacaattgccaacctcaatgagtgagccacagagtccctagtaaaagacccatcttcctcactccttggtacctcaac |
311 |
Q |
| |
|
|| || ||||||||||||||||||| |||||||||||||||| || || | |||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
29954989 |
gatacatacttccttcctcatccactattgccaacctcaatgtttgggctatcgagtccctagtaaaggacccatcttgctcactccttggtacctcaat |
29954890 |
T |
|
| Q |
312 |
agccactcccttttccaccaatgcccttgaaaacaaacattggtcaagcaaataaggcagtgtcacaaggacatggccaaaatgaaccttttcaataaca |
411 |
Q |
| |
|
||||| |||||| | | ||| ||||||||||||||||||||| | |||||||||| ||||||||||||||| |||||||||| ||| ||||| || |
|
|
| T |
29954889 |
tgccaccttcttttcttctagtgctcttgaaaacaaacattggtcaggtaaataaggcaatgtcacaaggacatgcccaaaatgaagcttctcaatgact |
29954790 |
T |
|
| Q |
412 |
gaaccagaaccacagtgactcat |
434 |
Q |
| |
|
||||| |||||||| |||||||| |
|
|
| T |
29954789 |
gaacctgaaccacaatgactcat |
29954767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 108 - 397
Target Start/End: Original strand, 51369360 - 51369649
Alignment:
| Q |
108 |
ggaaggaaccctatacttgtaaagagcagcaataaagtcatcaatatattgattgtgaatatcttttgaactgaaaaccttccccaactcttttgcattg |
207 |
Q |
| |
|
|||| |||| |||| ||| | ||||||||| || || || | ||| ||||||||||||| ||||||||||||||||| || |||| ||||| ||||| |
|
|
| T |
51369360 |
ggaatgaactctatgcttttgaagagcagcgattaaatctttaatgtattgattgtgaagatcttttgaactgaaaatttttcccatatctttagcattt |
51369459 |
T |
|
| Q |
208 |
ttcctgaaactacttccttcctcatccacaattgccaacctcaatgagtgagccacagagtccctagtaaaagacccatcttcctcactccttggtacct |
307 |
Q |
| |
|
|||||| | | || |||||||||||||| ||| |||||||||||| | || ||||||||||||||||| |||||||||| ||||||||||||||| | |
|
|
| T |
51369460 |
ttcctgcacgtgctaccttcctcatccactattaccaacctcaatgttttggctacagagtccctagtaaaggacccatcttgctcactccttggtactt |
51369559 |
T |
|
| Q |
308 |
caacagccactcccttttccaccaatgcccttgaaaacaaacattggtcaagcaaataaggcagtgtcacaaggacatggccaaaatgaa |
397 |
Q |
| |
|
||||||||||| |||||| | | | |||| | ||||||| |||||||| | |||||||| ||| ||||| ||||| |||| ||||| |
|
|
| T |
51369560 |
caacagccactttcttttcttctagtaatcttgcatacaaacactggtcaagtatataaggcaatgtgacaagaacatgcccaagatgaa |
51369649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 106; Significance: 7e-53; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 113 - 434
Target Start/End: Complemental strand, 12847066 - 12846745
Alignment:
| Q |
113 |
gaaccctatacttgtaaagagcagcaataaagtcatcaatatattgattgtgaatatcttttgaactgaaaaccttccccaactcttttgcattgttcct |
212 |
Q |
| |
|
||||||||||||| | |||||||||||| || || ||||| |||| ||||||| |||||||||||||||| ||| |||| |||||||||||||||||| |
|
|
| T |
12847066 |
gaaccctatacttttgaagagcagcaatgaaatcttcaatgtattttttgtgaagttcttttgaactgaaaatcttgcccatctcttttgcattgttcct |
12846967 |
T |
|
| Q |
213 |
gaaactacttccttcctcatccacaattgccaacctcaatgagtgagccacagagtccctagtaaaagacccatcttcctcactccttggtacctcaaca |
312 |
Q |
| |
|
| || || ||||||| |||||| ||||| |||||||||| | || ||| ||||||||||||| |||||||| |||||||| ||||| ||||||| |
|
|
| T |
12846966 |
gtaaataattccttcggcatccattattgctaacctcaatgttagggctacaaagtccctagtaaaggacccatcctcctcacttcttggaacctcaatg |
12846867 |
T |
|
| Q |
313 |
gccactcccttttccaccaatgcccttgaaaacaaacattggtcaagcaaataaggcagtgtcacaaggacatggccaaaatgaaccttttcaataacag |
412 |
Q |
| |
|
|||||| |||||| | | | | ||||||||||||||||| || ||||||||||||| ||| ||||| ||||| |||||||| | ||| ||||| || | |
|
|
| T |
12846866 |
gccactttcttttcagctagttctcttgaaaacaaacattgatctagcaaataaggcaatgtaacaagaacatgtccaaaatggagcttctcaatgactg |
12846767 |
T |
|
| Q |
413 |
aaccagaaccacagtgactcat |
434 |
Q |
| |
|
|||| |||||||| |||||||| |
|
|
| T |
12846766 |
aacctgaaccacaatgactcat |
12846745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 154 - 407
Target Start/End: Complemental strand, 14623128 - 14622875
Alignment:
| Q |
154 |
tattgattgtgaatatcttttgaactgaaaaccttccccaactcttttgcattgttcctgaaactacttccttcctcatccacaattgccaacctcaatg |
253 |
Q |
| |
|
|||| |||||||| |||||||||||| | |||||| |||| ||||| |||||||||||| || ||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
14623128 |
tattcattgtgaagatcttttgaactcacaacctttcccatgtctttggcattgttcctgtaaatacttccttcctcatccactattaccaacctcaatg |
14623029 |
T |
|
| Q |
254 |
agtgagccacagagtccctagtaaaagacccatcttcctcactccttggtacctcaacagccactcccttttccaccaatgcccttgaaaacaaacattg |
353 |
Q |
| |
|
| ||| ||| |||||||| ||| | ||||||| |||||||||||||||||||||||||||| |||||| | | | | |||| |||||||||||| |
|
|
| T |
14623028 |
ttttagcaacacagtccctattaatggccccatctggctcactccttggtacctcaacagccactttcttttcttctagtactcttgcaaacaaacattg |
14622929 |
T |
|
| Q |
354 |
gtcaagcaaataaggcagtgtcacaaggacatggccaaaatgaaccttttcaat |
407 |
Q |
| |
|
|||||| |||||||||| ||||||||| ||||| |||| ||||| | ||||||| |
|
|
| T |
14622928 |
gtcaagtaaataaggcaatgtcacaagaacatgcccaagatgaagcatttcaat |
14622875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 154 - 391
Target Start/End: Complemental strand, 14589470 - 14589233
Alignment:
| Q |
154 |
tattgattgtgaatatcttttgaactgaaaaccttccccaactcttttgcattgttcctgaaactacttccttcctcatccacaattgccaacctcaatg |
253 |
Q |
| |
|
|||| |||||||| |||||||||||| | |||||| |||| ||||| |||||||||||| || ||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
14589470 |
tattcattgtgaagatcttttgaactcacaacctttcccatttctttggcattgttcctgtaaatacttccttcctcatccactattaccaacctcaatg |
14589371 |
T |
|
| Q |
254 |
agtgagccacagagtccctagtaaaagacccatcttcctcactccttggtacctcaacagccactcccttttccaccaatgcccttgaaaacaaacattg |
353 |
Q |
| |
|
| ||| ||| |||||||| ||| | ||||||| |||||||||||||||||||||||||||| |||||| | | | | |||| |||||||||||| |
|
|
| T |
14589370 |
ttttagcaacacagtccctattaatggccccatctggctcactccttggtacctcaacagccactttcttttcttctagtactcttgcaaacaaacattg |
14589271 |
T |
|
| Q |
354 |
gtcaagcaaataaggcagtgtcacaaggacatggccaa |
391 |
Q |
| |
|
|||||| |||||||||| ||||||||| ||||| |||| |
|
|
| T |
14589270 |
gtcaagtaaataaggcaatgtcacaagaacatgcccaa |
14589233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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