View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8877_low_3 (Length: 446)
Name: NF8877_low_3
Description: NF8877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8877_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 17 - 429
Target Start/End: Original strand, 41525168 - 41525577
Alignment:
| Q |
17 |
gttaattcatatattatttgctgtgtagtgcaaacttggacctccttccaagaaaggtgcggcttccaagcaaggaactgcttcttttgctgaggtatat |
116 |
Q |
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| T |
41525168 |
gttaattcatatattatttgctgtgtagtgcaaacttggacctccttctaagaaaggtgcggcttccaagcaaggaactgcttcttttgctgaggtatat |
41525267 |
T |
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| Q |
117 |
tttttggttacctttaatactgtagaataattccgtggagtatggatacatctgttaattcatatattttttgctgaggtatatccatgcatcatgcata |
216 |
Q |
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| T |
41525268 |
tttttggttacctttaatactgtagaataattccgtggagtatggatacatctgttaattcatatattttttgctgaggtatatccatgcatcatgcata |
41525367 |
T |
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| Q |
217 |
ttaattgctgtccattatagtatgcgctgaacatgaacaagatttaatctcctgttttaaatctcaaattttgaatcctcttcaatgcacagaagaagaa |
316 |
Q |
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| T |
41525368 |
ttaattgctgtccatta----atgcgctgaacatgaacaagatttaatctcctgttttaaatctcaaattttgaatcctcttcaatgcacagaagaagaa |
41525463 |
T |
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| Q |
317 |
gaagaatttgtctgataaattgggacctcagtggagcaatagggaactagagaacttctatgaagtatacggagagcatggtagagattgg-aaaaaggt |
415 |
Q |
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| T |
41525464 |
gaagaatttgtctgataaattgggacctcagtggagcaatagggaactagagaacttctatgaagtatacggagagcatggtagagattggaaaaaaggt |
41525563 |
T |
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| Q |
416 |
gagcttttattttg |
429 |
Q |
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| T |
41525564 |
gagcttttgttttg |
41525577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 198 - 429
Target Start/End: Original strand, 36933297 - 36933520
Alignment:
| Q |
198 |
tatccatgcatcatgcatattaattgctgtccattatagtatgcgctgaacatgaacaagatttaatctcctgttttaaatctcaaattttgaatcctct |
297 |
Q |
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| T |
36933297 |
tatccatgcatcatgcatattaattgctgtccattatagtatgcgctgaacatgaacaag-tttaatctcctg-tttaaacctcacattgtgaatcctgt |
36933394 |
T |
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| Q |
298 |
tcaatgcacagaagaagaagaagaatttgtctgataaattgggacctcagtggagcaatagggaactagagaacttctatgaagtatacggagagcatgg |
397 |
Q |
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| T |
36933395 |
tcaatgcacagaagaagaag------ttgtctgataaattgggatctcagtggagcaagggggaactagagcgattctatgaagcatacagaaagcatgg |
36933488 |
T |
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| Q |
398 |
tagagattggaaaaaggtgagcttttattttg |
429 |
Q |
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| T |
36933489 |
taaagattggaagaaggtgtgcttttgttttg |
36933520 |
T |
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