View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8877_low_4 (Length: 378)
Name: NF8877_low_4
Description: NF8877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8877_low_4 |
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| [»] scaffold0334 (1 HSPs) |
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Alignment Details
Target: scaffold0334 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: scaffold0334
Description:
Target: scaffold0334; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 7 - 367
Target Start/End: Original strand, 16366 - 16726
Alignment:
| Q |
7 |
cagaacctgtgttctattttcgttcagcaatccaatttcttattactttcctattcaattccaattgttattacttcttatattatatcgctgcacatta |
106 |
Q |
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| T |
16366 |
cagaacctgtgttctattttcgttcagcaatccaatttcttattactttcctattcaattccaattgttattacttattatattatatcgctgcacatta |
16465 |
T |
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| Q |
107 |
ttactcaacccgattttattttgcagcacttaccaatccaaattccctttattttcaaaactgctgctacgtcccttttctttcttttatttaattaaat |
206 |
Q |
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| T |
16466 |
ttactcaacccgattttattttgcagcacttaccaatccaaattccctttattttcaaagttgctgctacgtcccttttctttcttttatttaattaaat |
16565 |
T |
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| Q |
207 |
tgaattgttgttgttggctgttccattgttgcggggctgagcatataacaattgttattgctgagtacgtgtgccatataatccatatattttcattgtt |
306 |
Q |
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| T |
16566 |
tgaattgttgttgttggctgttccattgttgcgggactgagcatataacaattgttattgttgagtacgtgtgccatataatccatatattttcattgtt |
16665 |
T |
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| Q |
307 |
tgcgctattgtttggtgtttggtgttcgattccaattgcagttatgtttcttggagtatta |
367 |
Q |
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| T |
16666 |
tgcgctactgtttggtgtttggtgttcgattccaattgcagttatgtttcttggagtatta |
16726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 7 - 359
Target Start/End: Complemental strand, 11177600 - 11177266
Alignment:
| Q |
7 |
cagaacctgtgttctattttcgttcagcaatccaatttcttattactttcctattcaattccaattgttattacttcttatattatatcgctgcacatta |
106 |
Q |
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| T |
11177600 |
cagaacctgtgttctattttcgttcagcaatccaatttcttattactttcttactcaattccaattgttattacttattatattatatcgctgcacatta |
11177501 |
T |
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| Q |
107 |
ttactcaacccgattttattttgcagcacttaccaatccaaattccctttattttcaaaactgctgctacgtcccttttctttcttttatttaattaaat |
206 |
Q |
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| T |
11177500 |
ttactcaacccgattttattttgcagcacttaccaatccaaattccctttattttcaaagctgctgctacgtcccttttctttcttttatttaattaaat |
11177401 |
T |
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| Q |
207 |
tgaattgttgttgttggctgttccattgttgcggggctgagcatataacaattgttattgctgagtacgtgtgccatataatccatatattttcattgtt |
306 |
Q |
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| T |
11177400 |
tgaattgtt------------------gttgctgggctgagtatataacaattgttattgctgagtacgtgtgccatataatccatatattttcattgtt |
11177319 |
T |
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| Q |
307 |
tgcgctattgtttggtgtttggtgttcgattccaattgcagttatgtttcttg |
359 |
Q |
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| T |
11177318 |
tgcgctactgtttggtgtttggtgttcgatttcaattgcagttatgtttcttg |
11177266 |
T |
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