View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8877_low_6 (Length: 330)
Name: NF8877_low_6
Description: NF8877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8877_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 20 - 315
Target Start/End: Complemental strand, 5593434 - 5593139
Alignment:
| Q |
20 |
aaagccatggttggtgtttccaattcttctcttgtctgcaaactatttgcagcaatctgtcaatgggaaatcccaagttccttgtctttttatctttgga |
119 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5593434 |
aaagccatggttggtgtttcctattcttctcttgtctgcaaactatttgcagcaatctgtcaatgggaaatcccaagttccttgtctttttatctttgga |
5593335 |
T |
|
| Q |
120 |
gattctttatctgatggtggaaacaacaacaaccttcctgctaactctccaagatcaaattacaatccttacgggatcgacttcccgatgggcccaaccg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5593334 |
gattctttatctgatggtggaaacaacaacaaccttcctgctaactctccaagatcaaattacaatccttacgggatcgacttcccgatgggcccaaccg |
5593235 |
T |
|
| Q |
220 |
gaagatttaccaacggtcgaactacaattgacataataagtaacattcttttaacttatccatattatgaaacatgaagtgtttttctttgttctt |
315 |
Q |
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| T |
5593234 |
gaagatttaccaacggtcgaactacaattgacataataagtaacattcttttaacttatccatattatgaaacatgaagtgtttttctttgttctt |
5593139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 49 - 315
Target Start/End: Complemental strand, 5587169 - 5586906
Alignment:
| Q |
49 |
tcttgtctgcaaactatttgcagcaatctgtcaatgggaaatcccaagttccttgtctttttatctttggagattctttatctgatggtggaaacaacaa |
148 |
Q |
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|||| ||||||||||||||||| |||| ||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||| ||||||||||||| |
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| T |
5587169 |
tcttttctgcaaactatttgcaacaatgtgtcaatgggaaatcccaagtgccttgtctatttatctttggagactctttatctgatagtggaaacaacaa |
5587070 |
T |
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| Q |
149 |
caaccttcctgctaactctccaagatcaaattacaatccttacgggatcgacttcccgatgggcccaaccggaagatttaccaacggtcgaactacaatt |
248 |
Q |
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| T |
5587069 |
taaccttcctac---ctctgcaaaatctaattacaatccctatggaatcgactttccgatgggcccaactggaagatttaccaacggtcgaacttcaatt |
5586973 |
T |
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| Q |
249 |
gacataataagtaacattcttttaacttatccatattatgaaacatgaagtgtttttctttgttctt |
315 |
Q |
| |
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|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
5586972 |
gacataatcagtaacattcttttaacttaaccatattatgaaacatgaagtgtttttctttgttctt |
5586906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 25 - 289
Target Start/End: Complemental strand, 5576824 - 5576562
Alignment:
| Q |
25 |
catggttggtgtttccaattcttctcttgtctgcaaactatttgcagcaatctgtcaatgggaaatcccaagttccttgtctttttatctttggagattc |
124 |
Q |
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|||||||| || ||| |||||| |||| ||||||||||||||||| |||| ||||||||| ||||||||||| || ||||||||||||||||||||||| |
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| T |
5576824 |
catggttgatggttcttattcttatcttttctgcaaactatttgcaacaatttgtcaatggaaaatcccaagtgccatgtctttttatctttggagattc |
5576725 |
T |
|
| Q |
125 |
tttatctgatggtggaaacaacaacaaccttcctgctaactctccaagatcaaattacaatccttacgggatcgacttcccgatgggcccaaccggaaga |
224 |
Q |
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| T |
5576724 |
tttatctgatagtggaaacaataacaaccttcccac---ctctgcaaaatctaattacaaaccttatggaattgacttcccgatgggcccaaccggaaga |
5576628 |
T |
|
| Q |
225 |
tttaccaacggtcgaactacaattgacataataagtaacatt-cttttaacttatccatattatga |
289 |
Q |
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|||||||||||||||||| |||||||||||||||||| |||| | || |||||||| ||||||||| |
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| T |
5576627 |
tttaccaacggtcgaacttcaattgacataataagtagcattccgttcaacttatctatattatga |
5576562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 25 - 276
Target Start/End: Complemental strand, 5573662 - 5573414
Alignment:
| Q |
25 |
catggttggtgtttccaattcttctcttgtctgcaaactatttgcagcaatctgtcaatgggaaatcccaagttccttgtctttttatctttggagattc |
124 |
Q |
| |
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||||||||||| ||| ||| || ||||||||||||||||||| | |||| ||||||||||||||| ||||| |||||| | ||||||||||||||||| |
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| T |
5573662 |
catggttggtggttcttattgttttcttgtctgcaaactattttaaacaatgtgtcaatgggaaatctcaagtgccttgtgtatttatctttggagattc |
5573563 |
T |
|
| Q |
125 |
tttatctgatggtggaaacaacaacaaccttcctgctaactctccaagatcaaattacaatccttacgggatcgacttcccgatgggcccaaccggaaga |
224 |
Q |
| |
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|||||||||| ||||||||||||| ||||||| ||| |||| ||| ||| |||||||| ||||| || || ||||| |||||||| |||||||||||| |
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| T |
5573562 |
tttatctgatagtggaaacaacaataaccttc---ctacctctgcaaaatctaattacaaaccttatggaattgactttccgatgggtccaaccggaaga |
5573466 |
T |
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| Q |
225 |
tttaccaacggtcgaactacaattgacataataagtaacattcttttaactt |
276 |
Q |
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|||||||||||| ||||| ||||||||||||||||||||||||||| ||||| |
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| T |
5573465 |
tttaccaacggtagaactgcaattgacataataagtaacattctttcaactt |
5573414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 5582942 - 5582835
Alignment:
| Q |
20 |
aaagccatggttggtgtttccaattcttctcttgtctgcaaactatttgcagcaatctgtcaatgggaaatcccaagttccttgtctttttatctttgga |
119 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5582942 |
aaagacatggttggtgtttcctattcttctcttgtctgcaaactatttgcagcaatctgtcaatgggaaatcccaagttccttgtctttttatctttgga |
5582843 |
T |
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| Q |
120 |
gattcttt |
127 |
Q |
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|||||||| |
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| T |
5582842 |
gattcttt |
5582835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 178 - 270
Target Start/End: Original strand, 12064683 - 12064775
Alignment:
| Q |
178 |
attacaatccttacgggatcgacttcccgatgggcccaaccggaagatttaccaacggtcgaactacaattgacataataagtaacattcttt |
270 |
Q |
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|
||||||| ||||| || || |||| |||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
12064683 |
attacaaaccttatggaattgactccccgatcggaacaaccggaagatttaccaatggtcgaactacaattgacataataagtaacattcttt |
12064775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 220 - 287
Target Start/End: Original strand, 12059314 - 12059381
Alignment:
| Q |
220 |
gaagatttaccaacggtcgaactacaattgacataataagtaacattcttttaacttatccatattat |
287 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||||||||||||||||| || ||| | ||||||| |
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| T |
12059314 |
gaagatttaccaatggtcgaactgcaattgacataataagtaacattctttcaatttaactatattat |
12059381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 12051887 - 12051943
Alignment:
| Q |
214 |
caaccggaagatttaccaacggtcgaactacaattgacataataagtaacattcttt |
270 |
Q |
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||||| ||||||||||||||||||||||| ||||| |||||||||||||| |||||| |
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| T |
12051887 |
caaccagaagatttaccaacggtcgaactgcaattaacataataagtaacgttcttt |
12051943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 290
Target Start/End: Complemental strand, 5582793 - 5582732
Alignment:
| Q |
230 |
caacggtcgaactacaattgacataataagtaac-attcttttaacttatccatattatgaa |
290 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||||| || ||||| |||||||||| |
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|
| T |
5582793 |
caacggtcgaactgcaattgacataataagtaacaattctttcaatttatctatattatgaa |
5582732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 158
Target Start/End: Original strand, 12051697 - 12051830
Alignment:
| Q |
25 |
catggttggtgtttccaattcttctcttgtctgcaaactatttgcagcaatctgtcaatgggaaatcccaagttccttgtctttttatctttggagattc |
124 |
Q |
| |
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||||||||||| | | |||||| || |||| ||||||||||| || || |||| ||| ||||| ||||| ||| |||| ||||||||||| || || |
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| T |
12051697 |
catggttggtgatgcttattcttttcatgtccgcaaactatttacaacacagtgtctatgagaaatatcaagtacctagtctgtttatctttggggactc |
12051796 |
T |
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| Q |
125 |
tttatctgatggtggaaacaacaacaaccttcct |
158 |
Q |
| |
|
||||| |||| ||| ||||||||| ||||||||| |
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| T |
12051797 |
tttatatgatagtgaaaacaacaataaccttcct |
12051830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 154
Target Start/End: Complemental strand, 36358051 - 36357988
Alignment:
| Q |
91 |
cccaagttccttgtctttttatctttggagattctttatctgatggtggaaacaacaacaacct |
154 |
Q |
| |
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||||||| || |||||||| || ||||||||||||||||| || ||||||||||||| ||||| |
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| T |
36358051 |
cccaagtaccatgtcttttcatttttggagattctttatcagacagtggaaacaacaataacct |
36357988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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