View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8877_low_7 (Length: 316)
Name: NF8877_low_7
Description: NF8877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8877_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 38446134 - 38446433
Alignment:
| Q |
1 |
tcatatcatactttcactctcatacttcatcctcgttttaacgatttcatatttttacaggaaccggaaacaaacggtaactcaccagctgaaacatcaa |
100 |
Q |
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| T |
38446134 |
tcatatcatactttcactctcatacttcatccttgttttaacgatttcatatttttacaggaaccggaaacaaacggtaactcaccagctgaaacatcaa |
38446233 |
T |
|
| Q |
101 |
caccgcaaccagaaaagacatcggttcttcctgtttttgatttcaaagaaggaacgaaatctccatggaaattcaccagagaagttccaagactttcgtt |
200 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
38446234 |
taccgcaaccagaaaagacatcggttcttccggtttttgatttcaaagaaggaacgaaatctccatggaaattcaccagagaagctccaagactttcgtt |
38446333 |
T |
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| Q |
201 |
ggatagtagagctattgtagatgcaaaaggaacaatgactatccatcctaaagaagaagaaaaacgacgacgttccacttccaccagcgtcgttgcaaaa |
300 |
Q |
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| T |
38446334 |
ggatagcagagctattgtagatgcaaaaggaacaatgactatccatcctaaagaagaagaaaaacgacgacgttccacttccaccagcgtcgttgcaaaa |
38446433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 91 - 284
Target Start/End: Original strand, 20210136 - 20210329
Alignment:
| Q |
91 |
gaaacatcaacaccgcaaccagaaaagacatcggttcttcctgtttttgatttcaaagaaggaacgaaatctccatggaaattcaccagagaagttccaa |
190 |
Q |
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|||||||||||||| |||| ||||||||| ||||||||| ||||| ||||||||||||||||| |||||||||||||||| ||||| ||||| ||||| |
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| T |
20210136 |
gaaacatcaacaccttaacctgaaaagacaatggttcttccagttttcgatttcaaagaaggaacaaaatctccatggaaatccaccaaagaagctccaa |
20210235 |
T |
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| Q |
191 |
gactttcgttggatagtagagctattgtagatgcaaaaggaacaatgactatccatcctaaagaagaagaaaaacgacgacgttccacttccac |
284 |
Q |
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| T |
20210236 |
gactatcgttagatagaaaagccgttgtagatgcaaaaggaacaatgaaaattcatctaaaagaggaagaaaaacgacgatgttccacttccac |
20210329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 92 - 265
Target Start/End: Complemental strand, 2243362 - 2243189
Alignment:
| Q |
92 |
aaacatcaacaccgcaaccagaaaagacatcggttcttcctgtttttgatttcaaagaaggaacgaaatctccatggaaattcaccagagaagttccaag |
191 |
Q |
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||||||||||||| |||||||||||||| | ||||||| ||||| |||||||| ||||||| |||||| ||||||||||||||||||||| || ||| |
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| T |
2243362 |
aaacatcaacaccttaaccagaaaagacaccaattcttccagttttcaatttcaaataaggaacaaaatcttcatggaaattcaccagagaagctctaag |
2243263 |
T |
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| Q |
192 |
actttcgttggatagtagagctattgtagatgcaaaaggaacaatgactatccatcctaaagaagaagaaaaac |
265 |
Q |
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|| ||||| ||||| ||||| |||||||||||||||||||||| | ||||||| ||||| |||||||||| |
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| T |
2243262 |
accatcgtttgatagcagagccgttgtagatgcaaaaggaacaataaaaatccatcaaaaagaggaagaaaaac |
2243189 |
T |
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