View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8878_high_1 (Length: 393)
Name: NF8878_high_1
Description: NF8878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8878_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 19 - 383
Target Start/End: Complemental strand, 35470702 - 35470337
Alignment:
| Q |
19 |
aaattgatgtttgtaaatgcactttttattaattagcaatagtagttgtacatcattttcaacattaattatcgaatgatctataannnnnnn-gtcatt |
117 |
Q |
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| T |
35470702 |
aaattgatgtttgtaaatgcactttttattaattagcaatagtagttgtacatcattttcaacattaattatcgaatgatctataattttttttgtcatt |
35470603 |
T |
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| Q |
118 |
aagaaaaaccatcagaaactcgatctataagtattaatgcaactttatctttaaatttaagcaaaaatagccttagaatattacgtgcagaaataaattt |
217 |
Q |
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| T |
35470602 |
aagaaaaaccatcagaaactcgatctataagcattaatgcaactttgtctttaaatttaagcaaaaatagacttagaatattacgtgcagaaataaattt |
35470503 |
T |
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| Q |
218 |
ttacatttaactttgtatcgatacatttgtagttaattattaacagtccaattgaagtaatattaaaatttaggttcaactcttgaaagcatgaacatgg |
317 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35470502 |
ttacatttaactttgtatagatacatttgtagttaattattaacagtccaattgaagtaatattaaaatttaggttcaactcttgaaagcatgaacatgg |
35470403 |
T |
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| Q |
318 |
atcttgtgtggggtggaagggaagggagaagaacttgccacaccaatacaccatctcatagaataa |
383 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
35470402 |
atcttgtgtggggtggaagggaagggagaagaacttgccacaccaatacaccatcccatagaataa |
35470337 |
T |
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