View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8878_high_3 (Length: 342)
Name: NF8878_high_3
Description: NF8878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8878_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 147; Significance: 2e-77; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 136 - 311
Target Start/End: Original strand, 41805146 - 41805321
Alignment:
| Q |
136 |
agagagcacttcaaatcaggatttctactgcagaagaaacaatggccgctgacaatgaagcttttcatgaaactatcacaagtactaaagagtggttcaa |
235 |
Q |
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| T |
41805146 |
agagagcacttcaaatcaggatttctactgcagaagcaacaatggccgctgacaatgaagcttttcatgaaactatcacaagtactaaagagtggttcaa |
41805245 |
T |
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| Q |
236 |
cagtgtgatatctggaatcgatactgtaagcttaaannnnnnngacaaccacaaaaatattgagaaccgcatctca |
311 |
Q |
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| T |
41805246 |
cagtgtgatatctggaatcgatactgtaagcttaaatttttttgacatccacaaaaatattgagaaccgcatctca |
41805321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 41804776 - 41804841
Alignment:
| Q |
14 |
cagagaacattagcagaacgagcagatgcatatcagaatttgaataaagaatatgaacaagttaac |
79 |
Q |
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| T |
41804776 |
cagagaacattagcagaacgagcagatgcatatcagaatttgaataaagaatatgaacaagttaac |
41804841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 80 - 142
Target Start/End: Original strand, 41805049 - 41805111
Alignment:
| Q |
80 |
cttcgcctgtcaaaccaaaatatccgggacaaagaacaattgctaactgaaaagggagagagc |
142 |
Q |
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| T |
41805049 |
cttcgcttgtcaaaccaaaatatccgggacaaagaacaattgctaagtgaaaagggagagagc |
41805111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 184 - 267
Target Start/End: Original strand, 41812017 - 41812100
Alignment:
| Q |
184 |
ctgacaatgaagcttttcatgaaactatcacaagtactaaagagtggttcaacagtgtgatatctggaatcgatactgtaagct |
267 |
Q |
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| T |
41812017 |
ctgacaatgaagcttttcatgaaactatcacaagtattaaaaagtgtgtcaacagtatgatatctgggatagatactataagct |
41812100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 260
Target Start/End: Original strand, 41798798 - 41798877
Alignment:
| Q |
181 |
ccgctgacaatgaagcttttcatgaaactatcacaagtactaaagagtggttcaacagtgtgatatctggaatcgatact |
260 |
Q |
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| T |
41798798 |
ccgctaacaatgaagcttttcatgaaactatcacaagtgttaaagtgtgtgtcaacagtgtgatatctgggatagatact |
41798877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 142
Target Start/End: Original strand, 41798656 - 41798718
Alignment:
| Q |
80 |
cttcgcctgtcaaaccaaaatatccgggacaaagaacaattgctaactgaaaagggagagagc |
142 |
Q |
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| T |
41798656 |
cttcgcctgtcaaaccaaaagctccgggttacagaacaattgctaagtgaaaaggaagagagc |
41798718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 41798383 - 41798442
Alignment:
| Q |
14 |
cagagaacattagcagaacgagcagatgcatatcagaatttgaataaagaatatgaacaa |
73 |
Q |
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| T |
41798383 |
cagagaacattggaagaacaagaagatgcatatcagaagttgaatgaagaatataaacaa |
41798442 |
T |
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