View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8878_high_7 (Length: 243)
Name: NF8878_high_7
Description: NF8878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8878_high_7 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 243
Target Start/End: Original strand, 26643288 - 26643512
Alignment:
| Q |
19 |
tgaatttcgctatcaggatttagaaaggtggaaaagtcctaaaaacacaattataacataaatatttttgcatgttatagaaattcaaaggtaatgcaat |
118 |
Q |
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| T |
26643288 |
tgaatttcgctatcaggatttagaaaggtggaaaagtcctaaaaacacaattataacataaatatttttgcatgttatagaaattcaaaggtaatgcaat |
26643387 |
T |
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| Q |
119 |
gaagaacaattcatggtaacataccacggcttgaacatctaagattatggtgaatgaatctatgtgcctcttggaagcaattgtgcaagcaggaaacttt |
218 |
Q |
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| T |
26643388 |
gaagaacaattcatggtaacataccacggcttgaacatctaagattatggtgaatgaatctatgagcctcttggaagcaattgtgcaagcaggaaacttt |
26643487 |
T |
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| Q |
219 |
atggcaaacaatttctcataatcct |
243 |
Q |
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| T |
26643488 |
atggcaaacaatttctcaaaatcct |
26643512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 50 - 235
Target Start/End: Original strand, 26658062 - 26658247
Alignment:
| Q |
50 |
aaaagtcctaaaaacacaattataaca-taaatatttttgcatgttatagaaattcaaaggtaatgcaatgaagaacaattcatggtaacataccacggc |
148 |
Q |
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| T |
26658062 |
aaaagtcctaaaaacacaactataagtgtaaatatttttgcatgttatagaaattcacaggcaatgcaattaggaa-aattaattgcaacataccatgcc |
26658160 |
T |
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| Q |
149 |
ttgaacatctaagattatggtgaatgaatctatgtgcctcttggaagcaattgtgcaagcaggaaactttatggcaaacaatttctc |
235 |
Q |
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| T |
26658161 |
ttgaacatcgatgattttggttattgaatctatgttcctcttggaagcaattgtgcatgcaggaaactttaccgcaaacaatatctc |
26658247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 70 - 236
Target Start/End: Original strand, 26671195 - 26671361
Alignment:
| Q |
70 |
tataacataaatatttttgcatgttatagaaattcaaaggtaatgcaatgaagaacaattcatggtaacataccacggcttgaacatctaagattatggt |
169 |
Q |
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||||| ||||||||||||||| |||| ||||||||| | |||||||||| |||||| | |||| ||||||||||| ||||||||||||||||| |||| |
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| T |
26671195 |
tataaaataaatatttttgcaagttaaagaaattcacaaacaatgcaatgaggaacaaataatggcaacataccacgccttgaacatctaagattgtggt |
26671294 |
T |
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| Q |
170 |
gaatgaatctatgtgcctcttggaagcaattgtgcaagcaggaaactttatggcaaacaatttctca |
236 |
Q |
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| T |
26671295 |
actggaatctatgtgcctcttggaagcaattgtgcaagcaggaaacttaatcgcaaaagatttctca |
26671361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 118 - 220
Target Start/End: Original strand, 26664209 - 26664311
Alignment:
| Q |
118 |
tgaagaacaattcatggtaacataccacggcttgaacatctaagattatggtgaatgaatctatgtgcctcttggaagcaattgtgcaagcaggaaactt |
217 |
Q |
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||||||||||||||||| ||||||| | | |||||| |||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26664209 |
tgaagaacaattcatggcaacatacaatgccttgaagatctaagattgtgatgcttgaatctatgtgcctcttggaagcaattgtgcaagcaggaaactt |
26664308 |
T |
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| Q |
218 |
tat |
220 |
Q |
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||| |
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| T |
26664309 |
tat |
26664311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 136 - 236
Target Start/End: Original strand, 54780829 - 54780929
Alignment:
| Q |
136 |
aacataccacggcttgaacatctaagattatggtgaatgaatctatgtgcctcttggaagcaattgtgcaagcaggaaactttatggcaaacaatttctc |
235 |
Q |
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|||||||||| ||||||||||||||||| ||||| |||||||||||||||||| | |||||| |||||||||||||||||||| ||||| ||||||| |
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| T |
54780829 |
aacataccactccttgaacatctaagattgtggtgcttgaatctatgtgcctctttgcagcaatagtgcaagcaggaaactttattgcaaaagatttctc |
54780928 |
T |
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| Q |
236 |
a |
236 |
Q |
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| T |
54780929 |
a |
54780929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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