View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8878_low_1 (Length: 512)

Name: NF8878_low_1
Description: NF8878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8878_low_1
NF8878_low_1
[»] chr7 (1 HSPs)
chr7 (43-497)||(450041-450494)
[»] chr3 (28 HSPs)
chr3 (105-406)||(9329670-9329968)
chr3 (106-399)||(9336381-9336671)
chr3 (43-182)||(9395314-9395453)
chr3 (312-436)||(9395081-9395205)
chr3 (322-395)||(9695838-9695911)
chr3 (319-408)||(9756230-9756319)
chr3 (313-374)||(16011838-16011899)
chr3 (121-236)||(41985629-41985744)
chr3 (120-183)||(9695615-9695678)
chr3 (319-407)||(9343678-9343766)
chr3 (121-236)||(9343846-9343961)
chr3 (121-196)||(41980895-41980970)
chr3 (119-167)||(9756450-9756498)
chr3 (121-160)||(9485969-9486008)
chr3 (121-160)||(13864281-13864320)
chr3 (319-400)||(9486161-9486242)
chr3 (322-407)||(9495009-9495094)
chr3 (213-266)||(16011774-16011827)
chr3 (322-407)||(41980690-41980775)
chr3 (319-407)||(9448147-9448235)
chr3 (319-407)||(9617657-9617745)
chr3 (319-367)||(41985504-41985552)
chr3 (213-267)||(9412978-9413032)
chr3 (121-167)||(9686753-9686799)
chr3 (354-407)||(9432720-9432773)
chr3 (113-178)||(16011695-16011760)
chr3 (120-168)||(9613916-9613964)
chr3 (319-407)||(9626669-9626757)
[»] chr6 (10 HSPs)
chr6 (113-196)||(7025797-7025880)
chr6 (120-196)||(7012861-7012937)
chr6 (112-236)||(7041497-7041621)
chr6 (113-196)||(7029854-7029937)
chr6 (121-196)||(7046880-7046955)
chr6 (112-196)||(9170858-9170942)
chr6 (319-463)||(213255-213401)
chr6 (328-407)||(7025580-7025659)
chr6 (328-407)||(7041341-7041420)
chr6 (112-196)||(9159486-9159570)
[»] chr8 (3 HSPs)
chr8 (319-407)||(13170830-13170918)
chr8 (319-407)||(44688977-44689065)
chr8 (121-178)||(13170684-13170741)
[»] chr2 (1 HSPs)
chr2 (319-407)||(20694472-20694560)
[»] chr5 (2 HSPs)
chr5 (118-185)||(18571163-18571230)
chr5 (112-236)||(33541653-33541777)
[»] chr1 (7 HSPs)
chr1 (415-462)||(8814646-8814693)
chr1 (423-460)||(235012-235049)
chr1 (319-407)||(4428461-4428549)
chr1 (319-407)||(4439690-4439778)
chr1 (423-462)||(231371-231410)
chr1 (423-462)||(246664-246703)
chr1 (423-462)||(251672-251711)
[»] chr4 (1 HSPs)
chr4 (1-38)||(55736688-55736725)


Alignment Details
Target: chr7 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 43 - 497
Target Start/End: Original strand, 450041 - 450494
Alignment:
Q  43 aattcttggtggcgagtagtgagttccagttgttgctagtgatttgctatacaaacggtgaccgtgttactgtatggattgatgtgtttaggcttgatga 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||    
T  450041 aattcttggtggcgagtagtgagttccagttgttgctagtgatttgctatacaaacggtgac--------tgtatggattgatgtgtttaggcttgatga 450132  T
Q  143 gaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttcttaggcgatctgtattccttttct------gcttctgcttcggatttg 236  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||    
T  450133 gaaggagaaaaagtgggtcaagttgaggaatttaggagatacaattttgttcttaggcgatctgtattccttttctgcttctgcttctgcttcggatttg 450232  T
Q  237 ggtttaacaaatgggaatggtgtgatctttactacagattattttgcctcccacggtcttagttgcatggaccgtaatatgagtgtttttcacttggatc 336  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  450233 ggtttaacaaatgggaatggtgtgatctttactacagattattttgcctcccgcggtcttagttgcatggaccgtaatatgagtgtttttcacttggatc 450332  T
Q  337 aaggtcgggtttcacccttgtctgattatccggattatttcaagttgttctggccacctccagattggatcactgagttgaattcataacagagtatgtt 436  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  450333 aaggtcgggtttcacccttgtctgattatccggattatttcaagttgttctggccacctccagattggatcactgagttgaattcataacagagtatgtt 450432  T
Q  437 ctcttgcattgaaaggtttctaatgttggcagttatt-gatagtgtattattgtgttgttag 497  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  450433 ctcttgcattgaaaggtttctaatgttggcagttattagatagtgtattattgtgttgttag 450494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 112; Significance: 2e-56; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 105 - 406
Target Start/End: Complemental strand, 9329968 - 9329670
Alignment:
Q  105 cgtgttactgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttcttaggcgatc 204  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||   |||||||||| ||  ||     
T  9329968 cgtgttcctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagttggcgaatttaggagataaggttttgttcttggggaatg 9329869  T
Q  205 tgtattccttttctgcttctgcttcggatttgggtttaacaaatgggaatggtgtgatctttactacagattattttgcctcccacggtcttagttgcat 304  Q
      ||||| ||||||||||||||||| || ||||||||  | ||||||||| |||| |||| || ||   | | || || || ||||| ||||| |  ||     
T  9329868 gatattcgttttctgcttctgcttccgagttgggttttgccaatgggaattgtgtcatctatagta---aatcttatggcttccacgatcttaatatcag 9329772  T
Q  305 ggaccgtaatatgagtgtttttcacttggatcaaggtcgggtttcacccttgtctgattatccggattatttcaagttgttctggccacctccagattgg 404  Q
    | |  |||| |||||||||||||||||||||||||||| || |||||| ||||| |||||||| || ||||||||||||||||||||||||||||| |||    
T  9329771 gaaatgtaaaatgagtgtttttcacttggatcaaggtcaggcttcacctttgtcggattatcctgaatatttcaagttgttctggccacctccagagtgg 9329672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 106 - 399
Target Start/End: Complemental strand, 9336671 - 9336381
Alignment:
Q  106 gtgttactgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttcttaggcgatct 205  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||   |||||||||| ||  ||      
T  9336671 gtgttcctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatgg 9336572  T
Q  206 gtattccttttctgcttctgcttcggatttgggtttaacaaatgggaatggtgtgatctttactacagattattttgcctcccacggtcttagttgcatg 305  Q
     | ||| ||||||||||||||||| || ||||||||  | ||||||||| |||| |||| || |||    | || |  || ||||||||||| |  || |    
T  9336571 atgttcgttttctgcttctgcttccgagttgggttttgccaatgggaattgtgtcatctatagtac---gtcttatagcttccacggtcttaatatcagg 9336475  T
Q  306 gaccgtaatatgagtgtttttcacttggatcaaggtcgggtttcacccttgtctgattatccggattatttcaagttgttctggccacctccag 399  Q
     |  |||| |||||||||||||||||||||||||||| || |||||| ||||| |||||||| || ||||||||||||||||||||||||||||    
T  9336474 aaatgtaaaatgagtgtttttcacttggatcaaggtcaggcttcacctttgtcggattatcccgaatatttcaagttgttctggccacctccag 9336381  T

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Target: chr3; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 43 - 182
Target Start/End: Complemental strand, 9395453 - 9395314
Alignment:
Q  43 aattcttggtggcgagtagtgagttccagttgttgctagtgatttgctatacaaacggtgaccgtgttactgtatggattgatgtgtttaggcttgatga 142  Q
    |||||||||| | || |||||| || |||||||||||||||  |   |||| ||| | ||| ||||||| |||| |||||||||||||||||||||||||    
T  9395453 aattcttggtcgagactagtgactttcagttgttgctagtggatatatataaaaatgatgatcgtgttattgtaaggattgatgtgtttaggcttgatga 9395354  T
Q  143 gaaggagaaaaagtgggtcaagttgacgaatttaggagat 182  Q
    |||| ||||||||||||| |||||||| ||||||||||||    
T  9395353 gaagcagaaaaagtgggtgaagttgactaatttaggagat 9395314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 312 - 436
Target Start/End: Complemental strand, 9395205 - 9395081
Alignment:
Q  312 aatatgagtgtttttcacttggatcaaggtcgggtttcacccttgtctgattatccggattatttcaagttgttctggccacctccagattggatcactg 411  Q
    |||||||||||||||||||||||||| |||||| |||| ||  ||||||| ||||| ||| |||| ||| ||||| |||| |||||||| |||||| | |    
T  9395205 aatatgagtgtttttcacttggatcagggtcggatttcccctctgtctgactatcctgatcatttgaagatgttcgggccgcctccagagtggatcgcgg 9395106  T
Q  412 agttgaattcataacagagtatgtt 436  Q
    ||||| |||||||| ||||||||||    
T  9395105 agttgcattcataatagagtatgtt 9395081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 322 - 395
Target Start/End: Original strand, 9695838 - 9695911
Alignment:
Q  322 tttttcacttggatcaaggtcgggtttcacccttgtctgattatccggattatttcaagttgttctggccacct 395  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||| ||||| |||||||| |||||| |||||    
T  9695838 tttttcacttggatcaaggtcgggtttcacctttgtctggttatcctgattacttcaagttattctggtcacct 9695911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 319 - 408
Target Start/End: Complemental strand, 9756319 - 9756230
Alignment:
Q  319 gtgtttttcacttggatcaaggtcgggtttcacccttgtctgattatccggattatttcaagttgttctggccacctccagattggatca 408  Q
    ||||||||| |||||| ||||||||||||||||  |||||||||||||| || || ||||||||||||| ||||||||| || |||||||    
T  9756319 gtgtttttcgcttggaccaaggtcgggtttcacttttgtctgattatcctgactacttcaagttgttcttgccacctccggagtggatca 9756230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 313 - 374
Target Start/End: Original strand, 16011838 - 16011899
Alignment:
Q  313 atatgagtgtttttcacttggatcaaggtcgggtttcacccttgtctgattatccggattat 374  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||    
T  16011838 atatgagtgtttttcacttggatcaaggtcggatttcacctttgtctgattatccagattat 16011899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 121 - 236
Target Start/End: Complemental strand, 41985744 - 41985629
Alignment:
Q  121 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttcttaggcgatctgtattccttttctgc 220  Q
    |||||||||| || ||||||||||||||||| || |||||||||||| ||| |||||| |||| | |||||||||| ||  ||   | ||| ||||||||    
T  41985744 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 41985645  T
Q  221 ttctgcttcggatttg 236  Q
    ||||||||||||||||    
T  41985644 ttctgcttcggatttg 41985629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 120 - 183
Target Start/End: Original strand, 9695615 - 9695678
Alignment:
Q  120 attgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagata 183  Q
    |||||||| || |||||||||||||||||||| ||||||||||||||||| |||||||| ||||    
T  9695615 attgatgtattcaggcttgatgagaaggagaagaagtgggtcaagttgaccaatttaggggata 9695678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 319 - 407
Target Start/End: Complemental strand, 9343766 - 9343678
Alignment:
Q  319 gtgtttttcacttggatcaaggtcgggtttcacccttgtctgattatccggattatttcaagttgttctggccacctccagattggatc 407  Q
    ||||||||||| |||||||||||||| |||||||  ||||||||| ||| || ||||| |  ||||||||||||||||| || ||||||    
T  9343766 gtgtttttcacatggatcaaggtcggctttcacctctgtctgattgtcctgaatattttaccttgttctggccacctccggagtggatc 9343678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 121 - 236
Target Start/End: Complemental strand, 9343961 - 9343846
Alignment:
Q  121 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttcttaggcgatctgtattccttttctgc 220  Q
    |||||||||||| ||||||||||| |||||| |||||||| ||||| || | |||||| ||||   |||||||||| ||  ||   | ||| ||||||||    
T  9343961 ttgatgtgtttaagcttgatgagatggagaagaagtgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttttctgc 9343862  T
Q  221 ttctgcttcggatttg 236  Q
    ||||||||||||||||    
T  9343861 ttctgcttcggatttg 9343846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 121 - 196
Target Start/End: Complemental strand, 41980970 - 41980895
Alignment:
Q  121 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttctt 196  Q
    |||||||||||||||||| | |||| ||||| || |||||||||||||||| |||||| |||| | ||||||||||    
T  41980970 ttgatgtgtttaggcttgctaagaaagagaagaaatgggtcaagttgacgagtttaggggatagagttttgttctt 41980895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 9756498 - 9756450
Alignment:
Q  119 gattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttg 167  Q
    ||||||||||| ||||||||||||||| ||||||| |||||||||||||    
T  9756498 gattgatgtgtataggcttgatgagaaagagaaaaggtgggtcaagttg 9756450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 121 - 160
Target Start/End: Original strand, 9485969 - 9486008
Alignment:
Q  121 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggt 160  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  9485969 ttgatgtgtttaggcttgatgagaaggagaagaagtgggt 9486008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 121 - 160
Target Start/End: Complemental strand, 13864320 - 13864281
Alignment:
Q  121 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggt 160  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  13864320 ttgatgtgtttaggcttgatgagagggagaaaaagtgggt 13864281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 319 - 400
Target Start/End: Original strand, 9486161 - 9486242
Alignment:
Q  319 gtgtttttcacttggatcaaggtcgggtttcacccttgtctgattatccggattatttcaagttgttctggccacctccaga 400  Q
    |||||||||||||||||||| ||||  ||||||| ||||||||||  ||   |||||  |||||||| ||||||||||||||    
T  9486161 gtgtttttcacttggatcaacgtcgaatttcaccattgtctgatttcccaatttattctaagttgttttggccacctccaga 9486242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 322 - 407
Target Start/End: Original strand, 9495009 - 9495094
Alignment:
Q  322 tttttcacttggatcaaggtcgggtttcacccttgtctgattatccggattatttcaagttgttctggccacctccagattggatc 407  Q
    ||||| |||||| | ||||||||||||| || |||| ||| | ||| || ||||| || ||||||||||||||||| |||||||||    
T  9495009 tttttgacttggttgaaggtcgggtttcgcctttgtgtgactgtcctgaatattttaacttgttctggccacctccggattggatc 9495094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 213 - 266
Target Start/End: Original strand, 16011774 - 16011827
Alignment:
Q  213 ttttctgcttctgcttcggatttgggtttaacaaatgggaatggtgtgatcttt 266  Q
    ||||||||||||||||||||||||||| || | ||||||||| |||| ||||||    
T  16011774 ttttctgcttctgcttcggatttgggtgtagcgaatgggaattgtgtaatcttt 16011827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 322 - 407
Target Start/End: Complemental strand, 41980775 - 41980690
Alignment:
Q  322 tttttcacttggatcaaggtcgggtttcacccttgtctgattatccggattatttcaagttgttctggccacctccagattggatc 407  Q
    |||||||||||||||||||||| ||||| || ||||| |||||||| || || | ||| |||||  |||||||||| || ||||||    
T  41980775 tttttcacttggatcaaggtcgtgtttcccctttgtccgattatcctgaatactacaacttgttagggccacctccggaatggatc 41980690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 407
Target Start/End: Complemental strand, 9448235 - 9448147
Alignment:
Q  319 gtgtttttcacttggatcaaggtcgggtttcacccttgtctgattatccggattatttcaagttgttctggccacctccagattggatc 407  Q
    |||||||| ||||||||||||| | | ||||||| ||||||||||  || ||   ||| || |||||||||||||||||||| ||||||    
T  9448235 gtgttttttacttggatcaaggcctgctttcacctttgtctgattgccctgaaattttgaacttgttctggccacctccagagtggatc 9448147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 407
Target Start/End: Original strand, 9617657 - 9617745
Alignment:
Q  319 gtgtttttcacttggatcaaggtcgggtttcacccttgtctgattatccggattatttcaagttgttctggccacctccagattggatc 407  Q
    |||| ||||| ||||||||||||||| ||||  |  |||||  |||||| || || ||||| ||||||||||||||||| |||||||||    
T  9617657 gtgtctttcatttggatcaaggtcggctttcgtctatgtctcgttatcctgaatacttcaacttgttctggccacctccggattggatc 9617745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 367
Target Start/End: Complemental strand, 41985552 - 41985504
Alignment:
Q  319 gtgtttttcacttggatcaaggtcgggtttcacccttgtctgattatcc 367  Q
    |||||||||||||||||||| || ||||||| || ||||||||||||||    
T  41985552 gtgtttttcacttggatcaatgttgggtttcccctttgtctgattatcc 41985504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 267
Target Start/End: Complemental strand, 9413032 - 9412978
Alignment:
Q  213 ttttctgcttctgcttcggatttgggtttaacaaatgggaatggtgtgatcttta 267  Q
    ||||||| ||| ||||||||||||||||| | |||||||||| ||||||| ||||    
T  9413032 ttttctgtttccgcttcggatttgggtttgagaaatgggaattgtgtgatattta 9412978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 121 - 167
Target Start/End: Complemental strand, 9686799 - 9686753
Alignment:
Q  121 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttg 167  Q
    ||||||| || |||||||||||||| ||||| |||||||||||||||    
T  9686799 ttgatgtattcaggcttgatgagaacgagaagaagtgggtcaagttg 9686753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 407
Target Start/End: Complemental strand, 9432773 - 9432720
Alignment:
Q  354 ttgtctgattatccggattatttcaagttgttctggccacctccagattggatc 407  Q
    |||||||||||||| || |||| ||| ||||||||||||||||| || ||||||    
T  9432773 ttgtctgattatcctgaatattacaacttgttctggccacctccggagtggatc 9432720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 178
Target Start/End: Original strand, 16011695 - 16011760
Alignment:
Q  113 tgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttagg 178  Q
    |||| |||||||||||||| |||| |||||||||||||| || ||||| || ||| | ||||||||    
T  16011695 tgtaaggattgatgtgtttgggctcgatgagaaggagaagaattgggttaaattgcctaatttagg 16011760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 9613916 - 9613964
Alignment:
Q  120 attgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttga 168  Q
    |||||| | |||| |||||||||||||||||| |||||||| |||||||    
T  9613916 attgatttttttaagcttgatgagaaggagaagaagtgggtgaagttga 9613964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 407
Target Start/End: Original strand, 9626669 - 9626757
Alignment:
Q  319 gtgtttttcacttggatcaaggtcgggtttcacccttgtctgattatccggattatttcaagttgttctggccacctccagattggatc 407  Q
    |||||| ||| ||||||||||||||||||||  |  | ||| ||||||  || |||||||| ||||| | ||||||||| |||||||||    
T  9626669 gtgtttatcatttggatcaaggtcgggtttcgtctgtatctcattatcatgaatatttcaacttgttttcgccacctccggattggatc 9626757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 113 - 196
Target Start/End: Complemental strand, 7025880 - 7025797
Alignment:
Q  113 tgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttctt 196  Q
    |||| |||||||| |||||| |||| ||||||||||||| |||||||| |||||||||| |||||||||||   ||||||||||    
T  7025880 tgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacgagtttaggagatagggttttgttctt 7025797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 120 - 196
Target Start/End: Complemental strand, 7012937 - 7012861
Alignment:
Q  120 attgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttctt 196  Q
    |||||| |||||| |||| ||||||||||||| |||||||| |||||||| | |||||||||||  |||||||||||    
T  7012937 attgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttctt 7012861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 112 - 236
Target Start/End: Complemental strand, 7041621 - 7041497
Alignment:
Q  112 ctgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttcttaggcgatctgtattc 211  Q
    |||||||||||||| ||||||  ||| ||||||||||||| |||||||| |||||||| | |||||| ||||   |||||||||| || ||  | | |||    
T  7041621 ctgtatggattgatttgtttaaacttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttc 7041522  T
Q  212 cttttctgcttctgcttcggatttg 236  Q
     || |||| ||||||||||||||||    
T  7041521 gttctctgtttctgcttcggatttg 7041497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 113 - 196
Target Start/End: Complemental strand, 7029937 - 7029854
Alignment:
Q  113 tgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttctt 196  Q
    |||| |||||||| |||||| |||| ||||||||||||| |||||||| |||||||||| ||| || ||||   ||||||||||    
T  7029937 tgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacgagtttcggggatagggttttgttctt 7029854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 121 - 196
Target Start/End: Complemental strand, 7046955 - 7046880
Alignment:
Q  121 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttctt 196  Q
    ||||| |||||| |||| ||||||||||||| |||||||| ||||| |||| |||||| |||| | ||||||||||    
T  7046955 ttgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttaacgagtttaggggataaagttttgttctt 7046880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 196
Target Start/End: Complemental strand, 9170942 - 9170858
Alignment:
Q  112 ctgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttctt 196  Q
    ||||| |||||||| |||||| |||| ||||||||||||| |||||||| || || |||| |||||| ||||   ||||||||||    
T  9170942 ctgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttctt 9170858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 463
Target Start/End: Original strand, 213255 - 213401
Alignment:
Q  319 gtgtttttcacttggatcaaggtcgggtttcacccttgtctgattatccggattatttcaagttgttctggccacctccagattggatc--actgagttg 416  Q
    ||||||| |||||||||||||||||  ||||| |  ||||| ||| ||| || | || ||| ||||||||||||||||| || ||||||      || ||    
T  213255 gtgttttgcacttggatcaaggtcgactttcatctgtgtctaattctcctgaattttccaacttgttctggccacctcccgagtggatcgtcaaaagctg 213354  T
Q  417 aattcataacagagtatgttctcttgcattgaaaggtttctaatgtt 463  Q
    ||||| |||  ||||||||| |||||||||||||||| ||| |||||    
T  213355 aattcgtaagtgagtatgttatcttgcattgaaaggtctctcatgtt 213401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 407
Target Start/End: Complemental strand, 7025659 - 7025580
Alignment:
Q  328 acttggatcaaggtcgggtttcacccttgtctgattatccggattatttcaagttgttctggccacctccagattggatc 407  Q
    ||||||||| |||||||  ||| |  ||||| |||||||| || |||| ||| |||||||||||||||||||| ||||||    
T  7025659 acttggatctaggtcggcattcgcttttgtccgattatcctgaatattccaacttgttctggccacctccagagtggatc 7025580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 407
Target Start/End: Complemental strand, 7041420 - 7041341
Alignment:
Q  328 acttggatcaaggtcgggtttcacccttgtctgattatccggattatttcaagttgttctggccacctccagattggatc 407  Q
    |||||||||||||||||  ||| ||  | ||||||||||| || |||| ||| |||||||||||||||||| | ||||||    
T  7041420 acttggatcaaggtcggcattcgcctctatctgattatcctgaatattccaacttgttctggccacctccaaagtggatc 7041341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 196
Target Start/End: Original strand, 9159486 - 9159570
Alignment:
Q  112 ctgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttctt 196  Q
    ||||| |||||||| |||||| |||| | ||||||||||| |||||||| || || |||| |||||| ||||   ||||||||||    
T  9159486 ctgtaaggattgatttgtttaagcttaacgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttctt 9159570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 319 - 407
Target Start/End: Original strand, 13170830 - 13170918
Alignment:
Q  319 gtgtttttcacttggatcaaggtcgggtttcacccttgtctgattatccggattatttcaagttgttctggccacctccagattggatc 407  Q
    |||||||||||||||||||| | ||| |||| || || ||||||| ||| || || ||||| ||||| |||||||||||||| ||||||    
T  13170830 gtgtttttcacttggatcaatgccggctttcccctttatctgattgtcccgagtacttcaacttgttttggccacctccagaatggatc 13170918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 407
Target Start/End: Original strand, 44688977 - 44689065
Alignment:
Q  319 gtgtttttcacttggatcaaggtcgggtttcacccttgtctgattatccggattatttcaagttgttctggccacctccagattggatc 407  Q
    |||||||||||||||||||| |  | ||||| || ||||| |||||||| ||| | | ||| ||||||||||||||||| || ||||||    
T  44688977 gtgtttttcacttggatcaacgcagagtttcccctttgtccgattatcctgatcactccaacttgttctggccacctcctgactggatc 44689065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 178
Target Start/End: Original strand, 13170684 - 13170741
Alignment:
Q  121 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttagg 178  Q
    |||||||||| || |||||||| |||||||| || |||||||||||| ||| ||||||    
T  13170684 ttgatgtgttcagacttgatgaaaaggagaagaaatgggtcaagttggcgagtttagg 13170741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 319 - 407
Target Start/End: Original strand, 20694472 - 20694560
Alignment:
Q  319 gtgtttttcacttggatcaaggtcgggtttcacccttgtctgattatccggattatttcaagttgttctggccacctccagattggatc 407  Q
    ||||||| || |||||||||| |||| ||||||| ||||| |||||||| || ||||| || ||||||||||| ||||| || ||||||    
T  20694472 gtgttttccatttggatcaagatcggctttcacctttgtccgattatcctgaatattttaacttgttctggcctcctcctgagtggatc 20694560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 118 - 185
Target Start/End: Complemental strand, 18571230 - 18571163
Alignment:
Q  118 ggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagataca 185  Q
    |||||||| | |||| |||||||||||||||||| |||||||| || ||||||| |||||| ||||||    
T  18571230 ggattgatttctttaagcttgatgagaaggagaagaagtgggtgaaattgacgagtttaggggataca 18571163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 236
Target Start/End: Complemental strand, 33541777 - 33541653
Alignment:
Q  112 ctgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttcttaggcgatctgtattc 211  Q
    ||||| ||||| || |||||| |||| ||||||||||||   ||||||| ||||| | || |||||||||||   ||||||||||||| | |   | |||    
T  33541777 ctgtaaggattcatttgtttaagcttaatgagaaggagacggagtgggtgaagttaaagagtttaggagatattgttttgttcttaggggctgactgttc 33541678  T
Q  212 cttttctgcttctgcttcggatttg 236  Q
    ||||||||| |||||||| ||||||    
T  33541677 cttttctgcatctgcttctgatttg 33541653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 415 - 462
Target Start/End: Original strand, 8814646 - 8814693
Alignment:
Q  415 tgaattcataacagagtatgttctcttgcattgaaaggtttctaatgt 462  Q
    ||||| |||||||| ||||||| |||||||||||||||||||||||||    
T  8814646 tgaatgcataacagtgtatgttatcttgcattgaaaggtttctaatgt 8814693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 423 - 460
Target Start/End: Complemental strand, 235049 - 235012
Alignment:
Q  423 taacagagtatgttctcttgcattgaaaggtttctaat 460  Q
    |||||||||||||| |||||||||||||||||||||||    
T  235049 taacagagtatgttatcttgcattgaaaggtttctaat 235012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 407
Target Start/End: Complemental strand, 4428549 - 4428461
Alignment:
Q  319 gtgtttttcacttggatcaaggtcgggtttcacccttgtctgattatccggattatttcaagttgttctggccacctccagattggatc 407  Q
    |||||||| ||||||||||| | | | || | || |||||||||| |||||| ||||| || ||||||||||||||| |||| ||||||    
T  4428549 gtgtttttgacttggatcaacgccagcttacgcctttgtctgattgtccggaatattttaacttgttctggccacctacagagtggatc 4428461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 407
Target Start/End: Complemental strand, 4439778 - 4439690
Alignment:
Q  319 gtgtttttcacttggatcaaggtcgggtttcacccttgtctgattatccggattatttcaagttgttctggccacctccagattggatc 407  Q
    |||||||| |||||||||||||   | |||| || |||||||||| ||| || ||||| || ||||||||||||||| |||| ||||||    
T  4439778 gtgtttttgacttggatcaaggaaagctttcgcctttgtctgattgtcctgactattttaacttgttctggccacctgcagagtggatc 4439690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 462
Target Start/End: Complemental strand, 231410 - 231371
Alignment:
Q  423 taacagagtatgttctcttgcattgaaaggtttctaatgt 462  Q
    ||||| |||||||| |||||||||||||||||||||||||    
T  231410 taacaaagtatgttatcttgcattgaaaggtttctaatgt 231371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 462
Target Start/End: Complemental strand, 246703 - 246664
Alignment:
Q  423 taacagagtatgttctcttgcattgaaaggtttctaatgt 462  Q
    ||||||||||| || |||||||||||||||||||||||||    
T  246703 taacagagtatattatcttgcattgaaaggtttctaatgt 246664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 462
Target Start/End: Original strand, 251672 - 251711
Alignment:
Q  423 taacagagtatgttctcttgcattgaaaggtttctaatgt 462  Q
    ||||| |||||||| |||||||||||||||||||||||||    
T  251672 taacaaagtatgttatcttgcattgaaaggtttctaatgt 251711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 55736688 - 55736725
Alignment:
Q  1 aatgacagagtttatttatgagtataatagcggtgggt 38  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  55736688 aatgacagagtttatttatgagtttaatagtggtgggt 55736725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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