View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8878_low_11 (Length: 241)

Name: NF8878_low_11
Description: NF8878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8878_low_11
NF8878_low_11
[»] chr5 (19 HSPs)
chr5 (5-219)||(6408483-6408692)
chr5 (175-225)||(25868501-25868551)
chr5 (174-222)||(25994943-25994991)
chr5 (175-225)||(25868115-25868165)
chr5 (87-144)||(21102297-21102354)
chr5 (165-223)||(14410236-14410293)
chr5 (87-124)||(16060838-16060875)
chr5 (174-223)||(25994552-25994601)
chr5 (174-223)||(26092579-26092628)
chr5 (11-51)||(6411642-6411682)
chr5 (87-139)||(9942730-9942782)
chr5 (164-219)||(14410769-14410823)
chr5 (189-223)||(7634003-7634037)
chr5 (74-144)||(7634076-7634146)
chr5 (176-221)||(7732848-7732893)
chr5 (66-123)||(11351894-11351951)
chr5 (74-123)||(25868018-25868067)
chr5 (174-223)||(32804887-32804936)
chr5 (96-144)||(40018073-40018121)
[»] chr2 (18 HSPs)
chr2 (88-223)||(42807392-42807522)
chr2 (91-223)||(42808587-42808715)
chr2 (67-144)||(42882455-42882532)
chr2 (176-223)||(19004816-19004863)
chr2 (180-223)||(24582450-24582493)
chr2 (175-222)||(33710901-33710948)
chr2 (66-144)||(3816382-3816460)
chr2 (164-223)||(304339-304405)
chr2 (174-218)||(26129434-26129478)
chr2 (183-223)||(37940144-37940184)
chr2 (165-223)||(303405-303464)
chr2 (97-144)||(6401727-6401774)
chr2 (177-223)||(38571665-38571711)
chr2 (187-225)||(38572275-38572313)
chr2 (176-217)||(6401796-6401837)
chr2 (191-228)||(6402352-6402389)
chr2 (74-142)||(745802-745870)
chr2 (175-203)||(27334566-27334594)
[»] chr6 (6 HSPs)
chr6 (67-144)||(5741525-5741602)
chr6 (174-222)||(32879698-32879746)
chr6 (67-144)||(5741178-5741255)
chr6 (176-223)||(1860386-1860433)
chr6 (176-222)||(31778837-31778883)
chr6 (176-221)||(30746502-30746547)
[»] scaffold0276 (1 HSPs)
scaffold0276 (87-140)||(3640-3693)
[»] chr1 (15 HSPs)
chr1 (67-144)||(11435319-11435396)
chr1 (99-222)||(11434683-11434801)
chr1 (175-224)||(28485905-28485954)
chr1 (87-144)||(28539455-28539512)
chr1 (87-123)||(3757442-3757478)
chr1 (65-141)||(3872135-3872211)
chr1 (67-143)||(28485813-28485889)
chr1 (67-139)||(30308266-30308338)
chr1 (67-142)||(18169182-18169257)
chr1 (174-208)||(40198813-40198847)
chr1 (177-206)||(43193855-43193884)
chr1 (174-219)||(45886977-45887022)
chr1 (128-156)||(32713163-32713191)
chr1 (96-144)||(44527896-44527944)
chr1 (185-225)||(46150429-46150469)
[»] chr4 (20 HSPs)
chr4 (73-144)||(40361206-40361277)
chr4 (74-143)||(4674944-4675013)
chr4 (75-142)||(40361752-40361819)
chr4 (174-222)||(11660962-11661010)
chr4 (88-144)||(53259741-53259797)
chr4 (88-139)||(43138859-43138910)
chr4 (164-222)||(32304776-32304834)
chr4 (74-144)||(51721524-51721593)
chr4 (87-144)||(26251404-26251461)
chr4 (66-123)||(26973958-26974015)
chr4 (87-144)||(42704359-42704416)
chr4 (164-219)||(19487516-19487570)
chr4 (67-122)||(26251602-26251657)
chr4 (175-217)||(4675041-4675083)
chr4 (74-124)||(26973314-26973364)
chr4 (67-141)||(31825854-31825928)
chr4 (174-223)||(32303914-32303963)
chr4 (90-123)||(53260307-53260340)
chr4 (188-225)||(55862278-55862315)
chr4 (67-139)||(21713292-21713364)
[»] chr8 (16 HSPs)
chr8 (74-144)||(45155927-45155997)
chr8 (74-144)||(45156443-45156513)
chr8 (175-223)||(7130615-7130663)
chr8 (175-222)||(45156024-45156071)
chr8 (67-121)||(2784957-2785011)
chr8 (66-144)||(9512488-9512566)
chr8 (175-220)||(1797748-1797793)
chr8 (87-124)||(39046601-39046638)
chr8 (175-220)||(39872184-39872229)
chr8 (166-222)||(7130131-7130186)
chr8 (175-219)||(42431681-42431725)
chr8 (176-223)||(17944824-17944871)
chr8 (175-222)||(45156369-45156416)
chr8 (74-144)||(7130690-7130760)
chr8 (176-220)||(35348676-35348720)
chr8 (175-223)||(42432042-42432090)
[»] chr7 (4 HSPs)
chr7 (176-225)||(42629198-42629247)
chr7 (175-223)||(16488177-16488225)
chr7 (176-206)||(1326136-1326166)
chr7 (87-141)||(47442240-47442294)
[»] chr3 (8 HSPs)
chr3 (175-222)||(16280945-16280992)
chr3 (74-144)||(4041108-4041178)
chr3 (67-141)||(39417919-39417993)
chr3 (87-144)||(53630339-53630396)
chr3 (174-205)||(51171069-51171100)
chr3 (175-208)||(4041047-4041080)
chr3 (67-144)||(36754194-36754271)
chr3 (66-142)||(23030646-23030722)
[»] scaffold0012 (1 HSPs)
scaffold0012 (173-222)||(36183-36232)
[»] scaffold0007 (4 HSPs)
scaffold0007 (87-144)||(187468-187525)
scaffold0007 (64-144)||(256388-256468)
scaffold0007 (176-222)||(186956-187002)
scaffold0007 (96-141)||(231852-231897)
[»] scaffold1107 (1 HSPs)
scaffold1107 (166-222)||(1921-1976)
[»] scaffold0051 (1 HSPs)
scaffold0051 (66-142)||(21103-21179)


Alignment Details
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 5 - 219
Target Start/End: Original strand, 6408483 - 6408692
Alignment:
Q  5 aggcttaatatcgatatataataggctatgggcttaaattggaacaggatggattggtgaatgaattcagctcttcactctccacttttcgctcgcgccc 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||| |    
T  6408483 aggcttaatatcgatatataataggctatgggcttaaattggaacaggatggattagtgaatgaattcagctcttcaccctccacttttcgctcacgctc 6408582  T
Q  105 tgcagccatgacgaaaatactcatgcgttagttaactaactaacgcaagtgtnnnnnnncgtgacttagttttttacacttgcgtgacttaagtcacgct 204  Q
    |||||||||| ||||||||| | |||||||||    ||||||||| ||| ||       ||||||||| |||||||||| ||||||||||||||||||||    
T  6408583 tgcagccatggcgaaaatacccctgcgttagt----taactaacgtaagcgtaaaaaaacgtgacttaattttttacacatgcgtgacttaagtcacgct 6408678  T
Q  205 gcataagttaactca 219  Q
    |||| ||||||||||    
T  6408679 gcat-agttaactca 6408692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 25868551 - 25868501
Alignment:
Q  175 tttttacacttgcgtgacttaagtcacgctgcataagttaactcacgcatg 225  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  25868551 tttttacacatgcgtgacttaagtcacgctgcataagttaactcacgcatg 25868501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 25994991 - 25994943
Alignment:
Q  174 ttttttacacttgcgtgacttaagtcacgctgcataagttaactcacgc 222  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||    
T  25994991 ttttttacacatgcgtgacttaagtcacgctgcatgagttaactcacgc 25994943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 175 - 225
Target Start/End: Original strand, 25868115 - 25868165
Alignment:
Q  175 tttttacacttgcgtgacttaagtcacgctgcataagttaactcacgcatg 225  Q
    ||||||||| || ||||||||||||||||||||| ||||||||||||||||    
T  25868115 tttttacacatgtgtgacttaagtcacgctgcatgagttaactcacgcatg 25868165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 144
Target Start/End: Complemental strand, 21102354 - 21102297
Alignment:
Q  87 cacttttcgctcgcgccctgcagccatgacgaaaatactcatgcgttagttaactaac 144  Q
    |||||||||||||||||||| |||| || | ||||||| |||||||||||||||||||    
T  21102354 cacttttcgctcgcgccctgtagccttgcccaaaatacccatgcgttagttaactaac 21102297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 14410236 - 14410293
Alignment:
Q  165 gtgacttagttttttacacttgcgtgacttaagtcacgctgcataagttaactcacgca 223  Q
    |||||||||||||| | || |||||||||||||||||||||| | ||||||||||||||    
T  14410236 gtgacttagttttt-atacatgcgtgacttaagtcacgctgcgtgagttaactcacgca 14410293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 124
Target Start/End: Complemental strand, 16060875 - 16060838
Alignment:
Q  87 cacttttcgctcgcgccctgcagccatgacgaaaatac 124  Q
    |||||||||||||||||||||||||||||| |||||||    
T  16060875 cacttttcgctcgcgccctgcagccatgaccaaaatac 16060838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 25994552 - 25994601
Alignment:
Q  174 ttttttacacttgcgtgacttaagtcacgctgcataagttaactcacgca 223  Q
    |||||||||| ||||||||||||||||||| || | ||||||||||||||    
T  25994552 ttttttacacatgcgtgacttaagtcacgccgcctgagttaactcacgca 25994601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 26092579 - 26092628
Alignment:
Q  174 ttttttacacttgcgtgacttaagtcacgctgcataagttaactcacgca 223  Q
    ||||||||||||||||||||||||||| |  |||| ||||||||||||||    
T  26092579 ttttttacacttgcgtgacttaagtcatgtcgcatgagttaactcacgca 26092628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 6411642 - 6411682
Alignment:
Q  11 aatatcgatatataataggctatgggcttaaattggaacag 51  Q
    |||||| ||||||||||||||||||||||||||| ||||||    
T  6411642 aatatcaatatataataggctatgggcttaaatttgaacag 6411682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 139
Target Start/End: Complemental strand, 9942782 - 9942730
Alignment:
Q  87 cacttttcgctcgcgccctgcagccatgacgaaaatactcatgcgttagttaa 139  Q
    |||||||| ||||||||||||||||||| ||||||||| | || |||||||||    
T  9942782 cacttttcactcgcgccctgcagccatgccgaaaatacccctgagttagttaa 9942730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 14410823 - 14410769
Alignment:
Q  164 cgtgacttagttttttacacttgcgtgacttaagtcacgctgcataagttaactca 219  Q
    ||||||||||||||| |||| || ||||||||||||||||||| | ||||||||||    
T  14410823 cgtgacttagttttt-acacatgtgtgacttaagtcacgctgcgtgagttaactca 14410769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 223
Target Start/End: Complemental strand, 7634037 - 7634003
Alignment:
Q  189 tgacttaagtcacgctgcataagttaactcacgca 223  Q
    ||||||||||||||| |||||||||||||||||||    
T  7634037 tgacttaagtcacgcagcataagttaactcacgca 7634003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 144
Target Start/End: Complemental strand, 7634146 - 7634076
Alignment:
Q  74 gctcttcactctccacttttcgctcgcgccctgcagccatgacgaaaatactcatgcgttagttaactaac 144  Q
    ||||||||| || | |||||| ||||||||||||||||||| | ||||| | | | |||||||||||||||    
T  7634146 gctcttcaccctgctcttttcactcgcgccctgcagccatgtcaaaaatgcccttacgttagttaactaac 7634076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 221
Target Start/End: Complemental strand, 7732893 - 7732848
Alignment:
Q  176 ttttacacttgcgtgacttaagtcacgctgcataagttaactcacg 221  Q
    |||||||| |||||||||||||||||||  ||| ||||||||||||    
T  7732893 ttttacacatgcgtgacttaagtcacgccacatgagttaactcacg 7732848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 11351951 - 11351894
Alignment:
Q  66 tgaattcagctcttcactctccacttttcgctcgcgccctgcagccatgacgaaaata 123  Q
    |||||||  |||| ||| || |||||||||||||| |||| |||||||||||||||||    
T  11351951 tgaattctactctccaccctacacttttcgctcgcacccttcagccatgacgaaaata 11351894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 25868018 - 25868067
Alignment:
Q  74 gctcttcactctccacttttcgctcgcgccctgcagccatgacgaaaata 123  Q
    ||||||| | || ||||||||||||||||||||||||||| || ||||||    
T  25868018 gctcttccccctgcacttttcgctcgcgccctgcagccatcaccaaaata 25868067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 32804936 - 32804887
Alignment:
Q  174 ttttttacacttgcgtgacttaagtcacgctgcataagttaactcacgca 223  Q
    |||||||||| || |||||||||||||||| || | ||||||||||||||    
T  32804936 ttttttacacatgtgtgacttaagtcacgccgcgtgagttaactcacgca 32804887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 40018073 - 40018121
Alignment:
Q  96 ctcgcgccctgcagccatgacgaaaatactcatgcgttagttaactaac 144  Q
    ||||||||||||||   || ||||||||| |||||||||||||||||||    
T  40018073 ctcgcgccctgcagtgttgtcgaaaatacccatgcgttagttaactaac 40018121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 88 - 223
Target Start/End: Original strand, 42807392 - 42807522
Alignment:
Q  88 acttttcgctcgcgccctgcagccatgacgaaaatactcatgcgttagttaactaactaacgcaagtgtnnnnnnncgtgacttagttttttacacttgc 187  Q
    |||||||| |||||||||||| |||| ||||||||||||||||||||||    ||||||||||||||||       | |||||||||||||||||| | |    
T  42807392 acttttcgttcgcgccctgcaaccataacgaaaatactcatgcgttagt----taactaacgcaagtgt-aaaaaacatgacttagttttttacacatac 42807486  T
Q  188 gtgacttaagtcacgctgcataagttaactcacgca 223  Q
    |||||||||||||||| |||| ||||||||||||||    
T  42807487 gtgacttaagtcacgccgcatgagttaactcacgca 42807522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 91 - 223
Target Start/End: Complemental strand, 42808715 - 42808587
Alignment:
Q  91 tttcgctcgcgccctgcagccatgacgaaaatactcatgcgttagttaactaactaacgcaagtgtnnnnnnncgtgacttagttttttacacttgcgtg 190  Q
    |||||||||| |||||||||||||| |||||||||| |||||||||||||    ||||||||||||        |||||||||||| |||||| ||||||    
T  42808715 tttcgctcgcaccctgcagccatgatgaaaatactcctgcgttagttaac----taacgcaagtgtaaaaaaatgtgacttagtttcttacacatgcgtg 42808620  T
Q  191 acttaagtcacgctgcataagttaactcacgca 223  Q
    ||||||||||||| |||| |||||||| |||||    
T  42808619 acttaagtcacgcagcattagttaactgacgca 42808587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 67 - 144
Target Start/End: Original strand, 42882455 - 42882532
Alignment:
Q  67 gaattcagctcttcactctccacttttcgctcgcgccctgcagccatgacgaaaatactcatgcgttagttaactaac 144  Q
    |||||| ||||||||| || |||||||||||| ||||||||||||||||| ||||||| | | || ||||||||||||    
T  42882455 gaattctgctcttcaccctgcacttttcgctcacgccctgcagccatgactaaaatacccctacgctagttaactaac 42882532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 223
Target Start/End: Original strand, 19004816 - 19004863
Alignment:
Q  176 ttttacacttgcgtgacttaagtcacgctgcataagttaactcacgca 223  Q
    |||||||| ||||||||||||||||||| |||| ||||||||||||||    
T  19004816 ttttacacatgcgtgacttaagtcacgccgcatgagttaactcacgca 19004863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 223
Target Start/End: Complemental strand, 24582493 - 24582450
Alignment:
Q  180 acacttgcgtgacttaagtcacgctgcataagttaactcacgca 223  Q
    |||||||||||| |||||||||||||||| ||||||||||||||    
T  24582493 acacttgcgtgagttaagtcacgctgcatgagttaactcacgca 24582450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 33710901 - 33710948
Alignment:
Q  175 tttttacacttgcgtgacttaagtcacgctgcataagttaactcacgc 222  Q
    ||||||||| |||||||||||||||||||||| | |||||||||||||    
T  33710901 tttttacacatgcgtgacttaagtcacgctgcgtgagttaactcacgc 33710948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 144
Target Start/End: Complemental strand, 3816460 - 3816382
Alignment:
Q  66 tgaattcagctcttcactctccacttttcgctcgcgccctgcagccatgacgaaaatactcatgcgttagttaactaac 144  Q
    ||||||| ||||||| |||| || |||||||| ||||| |||||||||||  |||||| | |||||||| |||||||||    
T  3816460 tgaattctgctcttcgctctgcatttttcgcttgcgccttgcagccatgatcaaaatatttatgcgttaattaactaac 3816382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 223
Target Start/End: Complemental strand, 304405 - 304339
Alignment:
Q  164 cgtgacttagttttttacacttgcgtgacttaag-------tcacgctgcataagttaactcacgca 223  Q
    |||||||||||||||||||| |||||||||||||       ||||||||||| ||||||||||||||    
T  304405 cgtgacttagttttttacacatgcgtgacttaagacttaagtcacgctgcatgagttaactcacgca 304339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 26129434 - 26129478
Alignment:
Q  174 ttttttacacttgcgtgacttaagtcacgctgcataagttaactc 218  Q
    |||||||||| ||| ||||||||||||||| ||||||||||||||    
T  26129434 ttttttacacatgcatgacttaagtcacgccgcataagttaactc 26129478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 37940184 - 37940144
Alignment:
Q  183 cttgcgtgacttaagtcacgctgcataagttaactcacgca 223  Q
    |||||||||||||||||||||| ||| ||||||||||||||    
T  37940184 cttgcgtgacttaagtcacgctacatgagttaactcacgca 37940144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 303405 - 303464
Alignment:
Q  165 gtgacttagtttt-ttacacttgcgtgacttaagtcacgctgcataagttaactcacgca 223  Q
    ||||||||||||| |||||| || |||||||||||||||| |||| | ||||||||||||    
T  303405 gtgacttagttttcttacacatgtgtgacttaagtcacgccgcatgaattaactcacgca 303464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 144
Target Start/End: Original strand, 6401727 - 6401774
Alignment:
Q  97 tcgcgccctgcagccatgacgaaaatactcatgcgttagttaactaac 144  Q
    |||| ||||||||||||  |||||||||||||| ||||||||||||||    
T  6401727 tcgcaccctgcagccattccgaaaatactcatgtgttagttaactaac 6401774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 38571665 - 38571711
Alignment:
Q  177 tttacacttgcgtgacttaagtcacgctgcataagttaactcacgca 223  Q
    ||||||| || ||||||||||||||||||||| ||||||||| ||||    
T  38571665 tttacacatgtgtgacttaagtcacgctgcatgagttaactctcgca 38571711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Complemental strand, 38572313 - 38572275
Alignment:
Q  187 cgtgacttaagtcacgctgcataagttaactcacgcatg 225  Q
    |||||||||||||||||||||| |||||| |||||||||    
T  38572313 cgtgacttaagtcacgctgcatgagttaattcacgcatg 38572275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 217
Target Start/End: Complemental strand, 6401837 - 6401796
Alignment:
Q  176 ttttacacttgcgtgacttaagtcacgctgcataagttaact 217  Q
    |||||||||||||| |||||||||||||||| | ||||||||    
T  6401837 ttttacacttgcgttacttaagtcacgctgcgttagttaact 6401796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 228
Target Start/End: Complemental strand, 6402389 - 6402352
Alignment:
Q  191 acttaagtcacgctgcataagttaactcacgcatgatg 228  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  6402389 acttaagtcacgctgcatgagttaactcacgcaggatg 6402352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 142
Target Start/End: Complemental strand, 745870 - 745802
Alignment:
Q  74 gctcttcactctccacttttcgctcgcgccctgcagccatgacgaaaatactcatgcgttagttaacta 142  Q
    ||||||||| || |||||||| || |||| ||||||||||| ||||||| | | |||| ||||||||||    
T  745870 gctcttcaccctgcacttttcacttgcgctctgcagccatgccgaaaatgcacctgcgctagttaacta 745802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 203
Target Start/End: Original strand, 27334566 - 27334594
Alignment:
Q  175 tttttacacttgcgtgacttaagtcacgc 203  Q
    |||||||||||||||||||||||||||||    
T  27334566 tttttacacttgcgtgacttaagtcacgc 27334594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 67 - 144
Target Start/End: Complemental strand, 5741602 - 5741525
Alignment:
Q  67 gaattcagctcttcactctccacttttcgctcgcgccctgcagccatgacgaaaatactcatgcgttagttaactaac 144  Q
    |||||| ||||||||| || |||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||    
T  5741602 gaattctgctcttcaccctgcacttttcgctcgcgccctgcagccatgaccaaaatacacctgcgttagttaactaac 5741525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 32879698 - 32879746
Alignment:
Q  174 ttttttacacttgcgtgacttaagtcacgctgcataagttaactcacgc 222  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||    
T  32879698 ttttttacacttgcgtgacttaagtcacgctgcgtgagttaactcacgc 32879746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 144
Target Start/End: Original strand, 5741178 - 5741255
Alignment:
Q  67 gaattcagctcttcactctccacttttcgctcgcgccctgcagccatgacgaaaatactcatgcgttagttaactaac 144  Q
    |||||| ||||||||| || ||||||| ||||||| |||||||||||||| |||||||  ||||| |||||| |||||    
T  5741178 gaattctgctcttcaccctgcactttttgctcgcgtcctgcagccatgaccaaaataccaatgcgctagttatctaac 5741255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 223
Target Start/End: Original strand, 1860386 - 1860433
Alignment:
Q  176 ttttacacttgcgtgacttaagtcacgctgcataagttaactcacgca 223  Q
    |||||||| |||||||||||||||||||  ||||||||||||||||||    
T  1860386 ttttacacatgcgtgacttaagtcacgcaacataagttaactcacgca 1860433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 31778837 - 31778883
Alignment:
Q  176 ttttacacttgcgtgacttaagtcacgctgcataagttaactcacgc 222  Q
    |||||||| ||||||||||||||||||| |||| |||||||||||||    
T  31778837 ttttacacatgcgtgacttaagtcacgccgcatgagttaactcacgc 31778883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 221
Target Start/End: Complemental strand, 30746547 - 30746502
Alignment:
Q  176 ttttacacttgcgtgacttaagtcacgctgcataagttaactcacg 221  Q
    |||||||| ||||||||||||||||||||| || | ||||||||||    
T  30746547 ttttacacatgcgtgacttaagtcacgctgtatgatttaactcacg 30746502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0276 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0276
Description:

Target: scaffold0276; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 87 - 140
Target Start/End: Complemental strand, 3693 - 3640
Alignment:
Q  87 cacttttcgctcgcgccctgcagccatgacgaaaatactcatgcgttagttaac 140  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  3693 cacttttcgctcgcgccctgcagccatgactaaaatactcctgcgttagttaac 3640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 67 - 144
Target Start/End: Complemental strand, 11435396 - 11435319
Alignment:
Q  67 gaattcagctcttcactctccacttttcgctcgcgccctgcagccatgacgaaaatactcatgcgttagttaactaac 144  Q
    |||||| ||||||||| || |||||||| ||||||||||||| ||||||| ||||||||||| || ||||||||||||    
T  11435396 gaattctgctcttcaccctgcacttttcactcgcgccctgcaaccatgaccaaaatactcatacgctagttaactaac 11435319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 222
Target Start/End: Original strand, 11434683 - 11434801
Alignment:
Q  99 gcgccctgcagccatgacgaaaatactcatgcgttagttaactaactaacgcaagtgtnnnnnnncgtgacttagttttttacacttgcgtgacttaagt 198  Q
    |||||||||||||||||| ||||||||| |||| ||||    ||||||||||||||||         |||||||| ||||||||| ||| ||||||||||    
T  11434683 gcgccctgcagccatgaccaaaatactcctgcgctagt----taactaacgcaagtgtaaaaaaaattgacttag-tttttacacatgcctgacttaagt 11434777  T
Q  199 cacgctgcataagttaactcacgc 222  Q
    ||| |||| | |||||||||||||    
T  11434778 cacactgcgtgagttaactcacgc 11434801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 28485954 - 28485905
Alignment:
Q  175 tttttacacttgcgtgacttaagtcacgctgcataagttaactcacgcat 224  Q
    ||||||||| |||||||||||||||||||||||| |||||| | ||||||    
T  28485954 tttttacacgtgcgtgacttaagtcacgctgcattagttaagtaacgcat 28485905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 28539455 - 28539512
Alignment:
Q  87 cacttttcgctcgcgccctgcagccatgacgaaaatactcatgcgttagttaactaac 144  Q
    ||||||||||||||||||||||||| || | ||||||| ||||| ||||| |||||||    
T  28539455 cacttttcgctcgcgccctgcagccttgcctaaaatacccatgcattagtaaactaac 28539512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 3757442 - 3757478
Alignment:
Q  87 cacttttcgctcgcgccctgcagccatgacgaaaata 123  Q
    |||||||||||||||||||||| ||||||||||||||    
T  3757442 cacttttcgctcgcgccctgcaaccatgacgaaaata 3757478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 3872135 - 3872211
Alignment:
Q  65 atgaattcagctcttcactctccacttttcgctcgcgccctgcagccatgacgaaaatactcatgcgttagttaact 141  Q
    |||||||| ||||||| | || ||||||||||||||||||||||| | || | ||||| | ||||||| ||||||||    
T  3872135 atgaattctgctcttccccctgcacttttcgctcgcgccctgcagtcttgccaaaaatgcccatgcgtgagttaact 3872211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 143
Target Start/End: Original strand, 28485813 - 28485889
Alignment:
Q  67 gaattcagctcttcactctccacttttcgctcgcgccctgcagccatgacgaaaatactcatgcgttagttaactaa 143  Q
    |||||| ||||||| | || ||||||||||||||| |||||||||||  | ||||| ||| | ||||||||||||||    
T  28485813 gaattctgctcttccccctgcacttttcgctcgcgacctgcagccatcccaaaaatgctcttacgttagttaactaa 28485889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 139
Target Start/End: Original strand, 30308266 - 30308338
Alignment:
Q  67 gaattcagctcttcactctccacttttcgctcgcgccctgcagccatgacgaaaatactcatgcgttagttaa 139  Q
    |||||||||||||||| || ||| ||| |||||||||||||||||||| | |||||  |  ||||||||||||    
T  30308266 gaattcagctcttcaccctgcacattttgctcgcgccctgcagccatgccaaaaatgtttttgcgttagttaa 30308338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 142
Target Start/End: Original strand, 18169182 - 18169257
Alignment:
Q  67 gaattcagctcttcactctccacttttcgctcgcgccctgcagccatgacgaaaatactcatgcgttagttaacta 142  Q
    |||||| ||||||||| || ||| ||| |||||| ||||||||||||| | ||||||||| ||||  |||||||||    
T  18169182 gaattctgctcttcaccctgcacattttgctcgcaccctgcagccatgccaaaaatactcttgcgcaagttaacta 18169257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 208
Target Start/End: Original strand, 40198813 - 40198847
Alignment:
Q  174 ttttttacacttgcgtgacttaagtcacgctgcat 208  Q
    |||||||||| ||||||||||||||||||||||||    
T  40198813 ttttttacacatgcgtgacttaagtcacgctgcat 40198847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 206
Target Start/End: Complemental strand, 43193884 - 43193855
Alignment:
Q  177 tttacacttgcgtgacttaagtcacgctgc 206  Q
    ||||||||||||||||||||||||||||||    
T  43193884 tttacacttgcgtgacttaagtcacgctgc 43193855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 219
Target Start/End: Original strand, 45886977 - 45887022
Alignment:
Q  174 ttttttacacttgcgtgacttaagtcacgctgcataagttaactca 219  Q
    |||||||||  |||||||||||||||||||  ||||||||||||||    
T  45886977 ttttttacatatgcgtgacttaagtcacgcgacataagttaactca 45887022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 156
Target Start/End: Original strand, 32713163 - 32713191
Alignment:
Q  128 tgcgttagttaactaactaacgcaagtgt 156  Q
    |||||||||||||||||||||||||||||    
T  32713163 tgcgttagttaactaactaacgcaagtgt 32713191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 44527896 - 44527944
Alignment:
Q  96 ctcgcgccctgcagccatgacgaaaatactcatgcgttagttaactaac 144  Q
    |||||||||||||||||||   ||||||||  |||||||||||||||||    
T  44527896 ctcgcgccctgcagccatgcttaaaatacttttgcgttagttaactaac 44527944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 46150469 - 46150429
Alignment:
Q  185 tgcgtgacttaagtcacgctgcataagttaactcacgcatg 225  Q
    ||||| |||||||||||||||| | ||||||||||||||||    
T  46150469 tgcgtcacttaagtcacgctgcgtgagttaactcacgcatg 46150429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 73 - 144
Target Start/End: Original strand, 40361206 - 40361277
Alignment:
Q  73 agctcttcactctccacttttcgctcgcgccctgcagccatgacgaaaatactcatgcgttagttaactaac 144  Q
    |||||| |||||| ||||||||||||||||  |||||||||||||||||||| | ||||||| |||||||||    
T  40361206 agctctccactctgcacttttcgctcgcgctttgcagccatgacgaaaatacccctgcgttaattaactaac 40361277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 74 - 143
Target Start/End: Original strand, 4674944 - 4675013
Alignment:
Q  74 gctcttcactctccacttttcgctcgcgccctgcagccatgacgaaaatactcatgcgttagttaactaa 143  Q
    ||||||||| || ||||||||||||||||||||||| |||||| ||||||| |||| | |||||||||||    
T  4674944 gctcttcaccctgcacttttcgctcgcgccctgcagtcatgaccaaaatacccatgtgctagttaactaa 4675013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 142
Target Start/End: Complemental strand, 40361819 - 40361752
Alignment:
Q  75 ctcttcactctccacttttcgctcgcgccctgcagccatgacgaaaatactcatgcgttagttaacta 142  Q
    |||||||| || |||||||||||||||||||||||||||||| ||||||  | |||| ||||||||||    
T  40361819 ctcttcaccctgcacttttcgctcgcgccctgcagccatgaccaaaatatccctgcgctagttaacta 40361752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 11661010 - 11660962
Alignment:
Q  174 ttttttacacttgcgtgacttaagtcacgctgcataagttaactcacgc 222  Q
    ||||||||||||||||||||||||||||||||  | |||||||||||||    
T  11661010 ttttttacacttgcgtgacttaagtcacgctgtgtgagttaactcacgc 11660962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 144
Target Start/End: Original strand, 53259741 - 53259797
Alignment:
Q  88 acttttcgctcgcgccctgcagccatgacgaaaatactcatgcgttagttaactaac 144  Q
    |||||||| ||||| |||||||| ||||||||||||||| |||||||||||| ||||    
T  53259741 acttttcgttcgcgtcctgcagctatgacgaaaatactcctgcgttagttaattaac 53259797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 139
Target Start/End: Original strand, 43138859 - 43138910
Alignment:
Q  88 acttttcgctcgcgccctgcagccatgacgaaaatactcatgcgttagttaa 139  Q
    ||||||||||| |||||||||||| |||||||||| | ||||||||||||||    
T  43138859 acttttcgctcacgccctgcagccttgacgaaaatgcccatgcgttagttaa 43138910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 164 - 222
Target Start/End: Complemental strand, 32304834 - 32304776
Alignment:
Q  164 cgtgacttagttttttacacttgcgtgacttaagtcacgctgcataagttaactcacgc 222  Q
    ||||||||| |||||||||| |||||||||||||||| ||||  | |||||||||||||    
T  32304834 cgtgacttaattttttacacatgcgtgacttaagtcatgctgggtgagttaactcacgc 32304776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 74 - 144
Target Start/End: Complemental strand, 51721593 - 51721524
Alignment:
Q  74 gctcttcactctccacttttcgctcgcgccctgcagccatgacgaaaatactcatgcgttagttaactaac 144  Q
    ||||||||| || |||||||||||||||||||||||| |||   ||||| ||| |||||||||||||||||    
T  51721593 gctcttcac-ctacacttttcgctcgcgccctgcagctatgttcaaaatgctcttgcgttagttaactaac 51721524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 26251404 - 26251461
Alignment:
Q  87 cacttttcgctcgcgccctgcagccatgacgaaaatactcatgcgttagttaactaac 144  Q
    |||||||||||||||||||||| ||||||  ||||| ||| |||| ||||||||||||    
T  26251404 cacttttcgctcgcgccctgcatccatgataaaaatgctcttgcgctagttaactaac 26251461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 26974015 - 26973958
Alignment:
Q  66 tgaattcagctcttcactctccacttttcgctcgcgccctgcagccatgacgaaaata 123  Q
    ||||||| ||||||| | || |||||||||||| |||||||||| |||||||||||||    
T  26974015 tgaattctgctcttctccctgcacttttcgctcacgccctgcagtcatgacgaaaata 26973958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 42704359 - 42704416
Alignment:
Q  87 cacttttcgctcgcgccctgcagccatgacgaaaatactcatgcgttagttaactaac 144  Q
    ||||||||||||||||||||||| | || | ||||||| |||||||||| ||||||||    
T  42704359 cacttttcgctcgcgccctgcaggcttgcccaaaatacccatgcgttagctaactaac 42704416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 219
Target Start/End: Original strand, 19487516 - 19487570
Alignment:
Q  164 cgtgacttagttttttacacttgcgtgacttaagtcacgctgcataagttaactca 219  Q
    ||||||||||||||| |||| |||||||||||| ||||||||| | ||||||||||    
T  19487516 cgtgacttagttttt-acacatgcgtgacttaactcacgctgcgtgagttaactca 19487570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 122
Target Start/End: Complemental strand, 26251657 - 26251602
Alignment:
Q  67 gaattcagctcttcactctccacttttcgctcgcgccctgcagccatgacgaaaat 122  Q
    |||||| |||||||||  | ||||||||| ||||||||||||| ||||||||||||    
T  26251657 gaattctgctcttcaccttgcacttttcgatcgcgccctgcagtcatgacgaaaat 26251602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 4675041 - 4675083
Alignment:
Q  175 tttttacacttgcgtgacttaagtcacgctgcataagttaact 217  Q
    ||||||||| |||||||||||||||||||||||| | ||||||    
T  4675041 tttttacacatgcgtgacttaagtcacgctgcatgaattaact 4675083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 124
Target Start/End: Original strand, 26973314 - 26973364
Alignment:
Q  74 gctcttcactctccacttttcgctcgcgccctgcagccatgacgaaaatac 124  Q
    ||||||||| || ||||||||||||||  |||||| |||||||||||||||    
T  26973314 gctcttcaccctgcacttttcgctcgcatcctgcaaccatgacgaaaatac 26973364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 141
Target Start/End: Complemental strand, 31825928 - 31825854
Alignment:
Q  67 gaattcagctcttcactctccacttttcgctcgcgccctgcagccatgacgaaaatactcatgcgttagttaact 141  Q
    |||||| ||||||||| || ||| ||| |||||||||||||||||||| | ||||| | | |||| |||||||||    
T  31825928 gaattctgctcttcaccctgcacattttgctcgcgccctgcagccatgccaaaaatgcccttgcgctagttaact 31825854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 32303914 - 32303963
Alignment:
Q  174 ttttttacacttgcgtgacttaagtcacgctgcataagttaactcacgca 223  Q
    |||||||||| | ||||||||||||||||  |||| ||||||||||||||    
T  32303914 ttttttacacatacgtgacttaagtcacgtcgcatgagttaactcacgca 32303963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 123
Target Start/End: Complemental strand, 53260340 - 53260307
Alignment:
Q  90 ttttcgctcgcgccctgcagccatgacgaaaata 123  Q
    |||||||||||| |||||||||||||||||||||    
T  53260340 ttttcgctcgcgtcctgcagccatgacgaaaata 53260307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 225
Target Start/End: Original strand, 55862278 - 55862315
Alignment:
Q  188 gtgacttaagtcacgctgcataagttaactcacgcatg 225  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  55862278 gtgacttaagtcacgccgcataagttaactcatgcatg 55862315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 139
Target Start/End: Complemental strand, 21713364 - 21713292
Alignment:
Q  67 gaattcagctcttcactctccacttttcgctcgcgccctgcagccatgacgaaaatactcatgcgttagttaa 139  Q
    |||||| ||||||||| || ||| ||| |||||||||||||||||||| | ||||| | | |||| |||||||    
T  21713364 gaattctgctcttcaccctgcacattttgctcgcgccctgcagccatgccaaaaatgcccttgcgctagttaa 21713292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 74 - 144
Target Start/End: Original strand, 45155927 - 45155997
Alignment:
Q  74 gctcttcactctccacttttcgctcgcgccctgcagccatgacgaaaatactcatgcgttagttaactaac 144  Q
    ||||||||| || ||||||||||||||||||| |||||||||| ||||||||| |||| || |||||||||    
T  45155927 gctcttcaccctgcacttttcgctcgcgccctacagccatgaccaaaatactcttgcgctaattaactaac 45155997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 74 - 144
Target Start/End: Complemental strand, 45156513 - 45156443
Alignment:
Q  74 gctcttcactctccacttttcgctcgcgccctgcagccatgacgaaaatactcatgcgttagttaactaac 144  Q
    ||||||||| || |||||||||  ||||||||||||||||||| |||| |||| |||||||||||||||||    
T  45156513 gctcttcaccctgcacttttcgtccgcgccctgcagccatgaccaaaaaactcctgcgttagttaactaac 45156443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 7130663 - 7130615
Alignment:
Q  175 tttttacacttgcgtgacttaagtcacgctgcataagttaactcacgca 223  Q
    ||||||| | |||||||||||||||||||||||| ||||||||||||||    
T  7130663 tttttacgcatgcgtgacttaagtcacgctgcatgagttaactcacgca 7130615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 45156024 - 45156071
Alignment:
Q  175 tttttacacttgcgtgacttaagtcacgctgcataagttaactcacgc 222  Q
    ||||||||| |||||||||||| ||||||||||| |||||||||||||    
T  45156024 tttttacacatgcgtgacttaaatcacgctgcatgagttaactcacgc 45156071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 67 - 121
Target Start/End: Original strand, 2784957 - 2785011
Alignment:
Q  67 gaattcagctcttcactctccacttttcgctcgcgccctgcagccatgacgaaaa 121  Q
    |||||| ||||||| | || ||||||||||||| |||||||||||||||||||||    
T  2784957 gaattctgctcttctccctgcacttttcgctcgtgccctgcagccatgacgaaaa 2785011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 144
Target Start/End: Complemental strand, 9512566 - 9512488
Alignment:
Q  66 tgaattcagctcttcactctccacttttcgctcgcgccctgcagccatgacgaaaatactcatgcgttagttaactaac 144  Q
    ||||||| ||||||||| || ||||||| |||||||| ||||| || ||  |||||||| |||||||||||||| ||||    
T  9512566 tgaattctgctcttcaccctgcactttttgctcgcgctctgcaaccttgctgaaaatacccatgcgttagttaagtaac 9512488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 1797748 - 1797793
Alignment:
Q  175 tttttacacttgcgtgacttaagtcacgctgcataagttaactcac 220  Q
    ||||||||| || ||||||||||||||||||| |||||||||||||    
T  1797748 tttttacacatgtgtgacttaagtcacgctgcgtaagttaactcac 1797793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 124
Target Start/End: Original strand, 39046601 - 39046638
Alignment:
Q  87 cacttttcgctcgcgccctgcagccatgacgaaaatac 124  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  39046601 cacttttcgctcgcgtcctgcagccatgacgaaaatac 39046638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 39872229 - 39872184
Alignment:
Q  175 tttttacacttgcgtgacttaagtcacgctgcataagttaactcac 220  Q
    ||||||||| || ||||||||||||||||||||| |||||||||||    
T  39872229 tttttacacatgtgtgacttaagtcacgctgcatgagttaactcac 39872184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 7130131 - 7130186
Alignment:
Q  166 tgacttagttttttacacttgcgtgacttaagtcacgctgcataagttaactcacgc 222  Q
    ||||||||||||| | || |||||||||||||||||||||| | |||||||||||||    
T  7130131 tgacttagttttt-atacatgcgtgacttaagtcacgctgcgtgagttaactcacgc 7130186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 42431681 - 42431725
Alignment:
Q  175 tttttacacttgcgtgacttaagtcacgctgcataagttaactca 219  Q
    ||||||||| |||||||||||||||| ||||||| ||||||||||    
T  42431681 tttttacacatgcgtgacttaagtcatgctgcatgagttaactca 42431725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 223
Target Start/End: Complemental strand, 17944871 - 17944824
Alignment:
Q  176 ttttacacttgcgtgacttaagtcacgctgcataagttaactcacgca 223  Q
    |||||||| || ||||||||||| ||||||||| ||||||||||||||    
T  17944871 ttttacacatgtgtgacttaagtaacgctgcatgagttaactcacgca 17944824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 45156416 - 45156369
Alignment:
Q  175 tttttacacttgcgtgacttaagtcacgctgcataagttaactcacgc 222  Q
    ||||||||| |||||||||||||||||||||| | ||||| |||||||    
T  45156416 tttttacacatgcgtgacttaagtcacgctgcttgagttatctcacgc 45156369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 144
Target Start/End: Complemental strand, 7130760 - 7130690
Alignment:
Q  74 gctcttcactctccacttttcgctcgcgccctgcagccatgacgaaaatactcatgcgttagttaactaac 144  Q
    ||||||||| || ||||||||||||||||| | || | ||||| ||||||| | || ||||||||||||||    
T  7130760 gctcttcaccctgcacttttcgctcgcgccttacaactatgactaaaatacccctgtgttagttaactaac 7130690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 35348676 - 35348720
Alignment:
Q  176 ttttacacttgcgtgacttaagtcacgctgcataagttaactcac 220  Q
    ||||| || |||||||||||||||||||||||| | |||||||||    
T  35348676 ttttatacatgcgtgacttaagtcacgctgcatgaattaactcac 35348720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 42432090 - 42432042
Alignment:
Q  175 tttttacacttgcgtgacttaagtcacgctgcataagttaactcacgca 223  Q
    ||||||||  ||||||| |||||||||||| ||| ||||||||||||||    
T  42432090 tttttacatatgcgtgatttaagtcacgctacatgagttaactcacgca 42432042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 42629247 - 42629198
Alignment:
Q  176 ttttacacttgcgtgacttaagtcacgctgcataagttaactcacgcatg 225  Q
    |||||||| ||| |||||||||||||||||||| ||||||||||||||||    
T  42629247 ttttacacatgcatgacttaagtcacgctgcatgagttaactcacgcatg 42629198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 16488225 - 16488177
Alignment:
Q  175 tttttacacttgcgtgacttaagtcacgctgcataagttaactcacgca 223  Q
    ||||||||| || ||||||||||||||||||||| |||||| |||||||    
T  16488225 tttttacacatgtgtgacttaagtcacgctgcatgagttaattcacgca 16488177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 206
Target Start/End: Complemental strand, 1326166 - 1326136
Alignment:
Q  176 ttttacacttgcgtgacttaagtcacgctgc 206  Q
    |||||||||||||||||||||||||||||||    
T  1326166 ttttacacttgcgtgacttaagtcacgctgc 1326136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 141
Target Start/End: Complemental strand, 47442294 - 47442240
Alignment:
Q  87 cacttttcgctcgcgccctgcagccatgacgaaaatactcatgcgttagttaact 141  Q
    |||||||| |||||||||||||||| ||  |||||| ||||||||| ||||||||    
T  47442294 cacttttcactcgcgccctgcagccttgctgaaaatgctcatgcgtaagttaact 47442240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 16280992 - 16280945
Alignment:
Q  175 tttttacacttgcgtgacttaagtcacgctgcataagttaactcacgc 222  Q
    ||||||||||||||||||||||||||||| || | |||||||||||||    
T  16280992 tttttacacttgcgtgacttaagtcacgccgcgtgagttaactcacgc 16280945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 74 - 144
Target Start/End: Complemental strand, 4041178 - 4041108
Alignment:
Q  74 gctcttcactctccacttttcgctcgcgccctgcagccatgacgaaaatactcatgcgttagttaactaac 144  Q
    ||||| ||| || ||||||||||||| ||||||||| |||||| ||||||| |||| | ||||||||||||    
T  4041178 gctctccaccctgcacttttcgctcgtgccctgcagtcatgaccaaaatacccatgtgctagttaactaac 4041108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 67 - 141
Target Start/End: Complemental strand, 39417993 - 39417919
Alignment:
Q  67 gaattcagctcttcactctccacttttcgctcgcgccctgcagccatgacgaaaatactcatgcgttagttaact 141  Q
    |||||| ||||||||| |||||| ||| ||||||||||| |||||||| | ||||||| | |||| |||||||||    
T  39417993 gaattctgctcttcaccctccacattttgctcgcgccctccagccatgccaaaaatacccttgcgctagttaact 39417919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 144
Target Start/End: Complemental strand, 53630396 - 53630339
Alignment:
Q  87 cacttttcgctcgcgccctgcagccatgacgaaaatactcatgcgttagttaactaac 144  Q
    ||||||||||||||||||||||| | || | ||||| | |||||||||||||||||||    
T  53630396 cacttttcgctcgcgccctgcaggcttgtccaaaattcccatgcgttagttaactaac 53630339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 205
Target Start/End: Original strand, 51171069 - 51171100
Alignment:
Q  174 ttttttacacttgcgtgacttaagtcacgctg 205  Q
    ||||||||||||||||||||||||||||||||    
T  51171069 ttttttacacttgcgtgacttaagtcacgctg 51171100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 208
Target Start/End: Complemental strand, 4041080 - 4041047
Alignment:
Q  175 tttttacacttgcgtgacttaagtcacgctgcat 208  Q
    ||||||||| ||||||||||||||||||||||||    
T  4041080 tttttacacatgcgtgacttaagtcacgctgcat 4041047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 144
Target Start/End: Complemental strand, 36754271 - 36754194
Alignment:
Q  67 gaattcagctcttcactctccacttttcgctcgcgccctgcagccatgacgaaaatactcatgcgttagttaactaac 144  Q
    |||||| ||||||||  || |||||||||||| |||| |||| | | ||| ||||||| | |||||||||||||||||    
T  36754271 gaattctgctcttcatcctgcacttttcgctcacgccttgcaactacgaccaaaatacccctgcgttagttaactaac 36754194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 142
Target Start/End: Complemental strand, 23030722 - 23030646
Alignment:
Q  66 tgaattcagctcttcactctccacttttcgctcgcgccctgcagccatgacgaaaatactcatgcgttagttaacta 142  Q
    ||||||| ||||||||| |  ||| |||||||||| ||||||||||||| | ||||| | |||||| || |||||||    
T  23030722 tgaattctgctcttcacccaacacatttcgctcgcaccctgcagccatgcccaaaatgcccatgcgctaattaacta 23030646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 222
Target Start/End: Complemental strand, 36232 - 36183
Alignment:
Q  173 gttttttacacttgcgtgacttaagtcacgctgcataagttaactcacgc 222  Q
    ||||||||||||| |||||||||||||||||||| | || ||||||||||    
T  36232 gttttttacacttacgtgacttaagtcacgctgcgtgagctaactcacgc 36183  T

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Target: scaffold0007 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 144
Target Start/End: Complemental strand, 187525 - 187468
Alignment:
Q  87 cacttttcgctcgcgccctgcagccatgacgaaaatactcatgcgttagttaactaac 144  Q
    |||||||||||||||||||||| ||||||||||||| | | |||  ||||||||||||    
T  187525 cacttttcgctcgcgccctgcaaccatgacgaaaatgcccctgcactagttaactaac 187468  T

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Target: scaffold0007; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 144
Target Start/End: Original strand, 256388 - 256468
Alignment:
Q  64 aatgaattcagctcttcactctccacttttcgctcgcgccctgcagccatgacgaaaatactcatgcgttagttaactaac 144  Q
    ||||||||| ||||||||| || ||| ||| ||||  ||||||||| | || | ||||||| |||||||||||||||||||    
T  256388 aatgaattctgctcttcaccctgcacattttgctcaggccctgcaggcgtgcccaaaatacccatgcgttagttaactaac 256468  T

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Target: scaffold0007; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 186956 - 187002
Alignment:
Q  176 ttttacacttgcgtgacttaagtcacgctgcataagttaactcacgc 222  Q
    |||||||| || ||||||||||||||| ||||| |||||||||||||    
T  186956 ttttacacatgtgtgacttaagtcacgttgcatgagttaactcacgc 187002  T

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Target: scaffold0007; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 141
Target Start/End: Original strand, 231852 - 231897
Alignment:
Q  96 ctcgcgccctgcagccatgacgaaaatactcatgcgttagttaact 141  Q
    ||||||||||||||||||| | ||| ||||| ||||||||||||||    
T  231852 ctcgcgccctgcagccatgcctaaattactcttgcgttagttaact 231897  T

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Target: scaffold1107 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1107
Description:

Target: scaffold1107; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 1976 - 1921
Alignment:
Q  166 tgacttagttttttacacttgcgtgacttaagtcacgctgcataagttaactcacgc 222  Q
    ||||||||||||| |||  |||||||||||||||||| ||| | |||||||||||||    
T  1976 tgacttagttttt-acagatgcgtgacttaagtcacgttgcgtgagttaactcacgc 1921  T

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Target: scaffold0051 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 142
Target Start/End: Complemental strand, 21179 - 21103
Alignment:
Q  66 tgaattcagctcttcactctccacttttcgctcgcgccctgcagccatgacgaaaatactcatgcgttagttaacta 142  Q
    ||||||| ||||||||| |  ||| ||||||||||  |||||||||||  | ||||| | |||||||||||||||||    
T  21179 tgaattctgctcttcacccagcacatttcgctcgcatcctgcagccatatccaaaatgcccatgcgttagttaacta 21103  T

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