View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8878_low_4 (Length: 375)
Name: NF8878_low_4
Description: NF8878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8878_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 364
Target Start/End: Original strand, 43019888 - 43020239
Alignment:
| Q |
19 |
cttcttgcataggtcgttgacggtggtgttgatgatgcgaattgggatggccatttgatgacgaaagatttagcttctgcaaaaacccatttagcacatt |
118 |
Q |
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| T |
43019888 |
cttcttgcataggtcgttgacggtggtgttgatgatgcaaattgggatggccatttgatgacgacggatttagcttctgcaaaaacccatttagcacatt |
43019987 |
T |
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| Q |
119 |
tgttattcttacccatcatgaaattaaatcaaaaacaataatatatatactcttgc------nnnnnnnnnggaatatttctaaaagcaactttaaaatc |
212 |
Q |
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| T |
43019988 |
tgttattcttacccatcatgaaattaaatcaaaaacaataatatatatactcttgcaaaaaaaaaaaaaaaggaatatttctaaaagcaactttaaaatc |
43020087 |
T |
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| Q |
213 |
accaatttagatagtttannnnnnnnnnnnngacaaaattttagatagtttattgtacatgtatactttttacaatttgttccatgtgttcttattttac |
312 |
Q |
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| T |
43020088 |
accaatttagatagtttattttttattttttgacaaaattttagatagtttattgtacatgtatactttttacaatttgttccatgtgtttttattttac |
43020187 |
T |
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| Q |
313 |
ttttcagcacaaattcgcttgtttcttgccaaaaactcattattagtataat |
364 |
Q |
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| T |
43020188 |
ttttcagcacaaattcgcttgtttcttgccaaaaactcattattagtataat |
43020239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 252 - 361
Target Start/End: Original strand, 35058670 - 35058779
Alignment:
| Q |
252 |
tttagatagtttattgtacatgtatactttttacaatttgttccatgtgttcttattttacttttcagcacaaattcgcttgtttcttgccaaaaactca |
351 |
Q |
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| T |
35058670 |
tttagatagtttattgtacatgactagtttttacaatttgtaccatgtgtttttattatacttttcagcacaaaatcgcttgtttcttgccaaaaactca |
35058769 |
T |
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| Q |
352 |
ttattagtat |
361 |
Q |
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| T |
35058770 |
ttattagtat |
35058779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 258 - 361
Target Start/End: Original strand, 42808267 - 42808370
Alignment:
| Q |
258 |
tagtttattgtacatgtatactttttacaatttgttccatgtgttcttattttacttttcagcacaaattcgcttgtttcttgccaaaaactcattatta |
357 |
Q |
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| T |
42808267 |
tagtttattgtacatgactactttatacaatttgtgtcatgtgttcgtattttatttttcagcacaaactcgcttggttcttgccataaactcattatta |
42808366 |
T |
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| Q |
358 |
gtat |
361 |
Q |
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|||| |
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| T |
42808367 |
gtat |
42808370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 35058550 - 35058598
Alignment:
| Q |
92 |
cttctgcaaaaacccatttagcacatttgttattcttacccatcatgaa |
140 |
Q |
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| T |
35058550 |
cttctgcaaaaacccatttggcacatttgttattctgacccatcatgaa |
35058598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 230
Target Start/End: Original strand, 35058643 - 35058682
Alignment:
| Q |
191 |
ttctaaaagcaactttaaaatcaccaatttagatagttta |
230 |
Q |
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| T |
35058643 |
ttctaaaagcaactttaaaatcatcaatttagatagttta |
35058682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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