View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8878_low_6 (Length: 324)
Name: NF8878_low_6
Description: NF8878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8878_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 16)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 13130000 - 13129686
Alignment:
| Q |
1 |
tgatatactacctagtgaagagcgtgttagtccaaatacaaagttaatttattctatgtattctatgggaaggatggaacaaatatggggagaagactgc |
100 |
Q |
| |
|
||||||||||||||||| | | | ||||||||||||||||| || ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13130000 |
tgatatactacctagtggataccatgttagtccaaatacaactttgatttactctttgtattctatgggaaggatggaacaaatatggggagaagactgc |
13129901 |
T |
|
| Q |
101 |
atggaatttaagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcgtagctttcaacacaggacccagaatttgta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13129900 |
atggaatttaagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcgtagctttcaacacaggacccagaatttgta |
13129801 |
T |
|
| Q |
201 |
taggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcaccctgtaaccccaag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13129800 |
taggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcaccctgtaaccccaag |
13129701 |
T |
|
| Q |
301 |
gctttctctgcttct |
315 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
13129700 |
gctttctgtgcttct |
13129686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 13094571 - 13094265
Alignment:
| Q |
1 |
tgatatactacctagtgaagagcgtgttagtccaaatacaaagttaatttattctatgtattctatgggaaggatggaacaaatatggggagaagactgc |
100 |
Q |
| |
|
||||||||||||||||| | | | ||||| ||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13094571 |
tgatatactacctagtggataccatgttactccaaatacaactttaatttactctttgtattctatgggaaggatggaacaaatatggggagaagactgc |
13094472 |
T |
|
| Q |
101 |
atggaatttaagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcgtagctttcaacacaggacccagaatttgta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
13094471 |
atggaatttaagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcatagctttcaacacaggacccagaatttgta |
13094372 |
T |
|
| Q |
201 |
taggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcaccctgtaaccccaag |
300 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13094371 |
taggtaaagatattagtttcattcaaatgaagatggtcgcagctgctttgttacggaagtttcacatacaggtggtggaaggtcaccctgtaaccccaag |
13094272 |
T |
|
| Q |
301 |
gctttct |
307 |
Q |
| |
|
||||||| |
|
|
| T |
13094271 |
gctttct |
13094265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 2 - 307
Target Start/End: Complemental strand, 13161692 - 13161387
Alignment:
| Q |
2 |
gatatactacctagtgaagagcgtgttagtccaaatacaaagttaatttattctatgtattctatgggaaggatggaacaaatatggggagaagactgca |
101 |
Q |
| |
|
|||||||||||||||| ||| ||| ||||||||||||||| ||||| || ||||||||||||||||| |||||||||||| ||||||| |||||||||| |
|
|
| T |
13161692 |
gatatactacctagtggagaacgtattagtccaaatacaagtttaatgtactctatgtattctatgggcaggatggaacaactatggggggaagactgca |
13161593 |
T |
|
| Q |
102 |
tggaatttaagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcgtagctttcaacacaggacccagaatttgtat |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
13161592 |
tggaatttaagcctgagagatggatatctgagaggggagatattatacatgtaccttcttacaagttcatatctttcaacacaggacccagaatttgtat |
13161493 |
T |
|
| Q |
202 |
aggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcaccctgtaaccccaagg |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
13161492 |
aggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacggaagtttcacatacaggtggtggaaggtcaccttgtaaccccaagg |
13161393 |
T |
|
| Q |
302 |
ctttct |
307 |
Q |
| |
|
|||||| |
|
|
| T |
13161392 |
ctttct |
13161387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 2 - 306
Target Start/End: Original strand, 13070197 - 13070501
Alignment:
| Q |
2 |
gatatactacctagtgaagagcgtgttagtccaaatacaaagttaatttattctatgtattctatgggaaggatggaacaaatatggggagaagactgca |
101 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |||| | || ||| |||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13070197 |
gatatactacctagtggagagcgtgttagtccaaatacaaggttattgtactctttgtacgctatgggaaggatggaacaaatatggggagaagactgca |
13070296 |
T |
|
| Q |
102 |
tggaatttaagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcgtagctttcaacacaggacccagaatttgtat |
201 |
Q |
| |
|
||||||||||||||||||||||| |||| |||| ||| | ||||||||||| ||||||||||||||| |||||||||| ||||| || |||| |||| | |
|
|
| T |
13070297 |
tggaatttaagcctgagagatgggtatcagagacaggacacattatacatgttccatcttacaagttcatagctttcaatacaggtccgagaagttgttt |
13070396 |
T |
|
| Q |
202 |
aggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcaccctgtaaccccaagg |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
13070397 |
gggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcaccctgtaaccccaaag |
13070496 |
T |
|
| Q |
302 |
ctttc |
306 |
Q |
| |
|
||||| |
|
|
| T |
13070497 |
ctttc |
13070501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 2 - 299
Target Start/End: Complemental strand, 13204630 - 13204333
Alignment:
| Q |
2 |
gatatactacctagtgaagagcgtgttagtccaaatacaaagttaatttattctatgtattctatgggaaggatggaacaaatatggggagaagactgca |
101 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |||| | || ||| |||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13204630 |
gatatactacctagtggagagcgtgttagtccaaatacaaggttattgtactctttgtacgctatgggaaggatggaacaaatatggggagaagactgca |
13204531 |
T |
|
| Q |
102 |
tggaatttaagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcgtagctttcaacacaggacccagaatttgtat |
201 |
Q |
| |
|
||||||||||||||||||||||| |||| |||| ||| | ||||||||||||||||||||||||||| |||||||||| ||||| || |||| |||| | |
|
|
| T |
13204530 |
tggaatttaagcctgagagatgggtatcagagacaggacacattatacatgtaccatcttacaagttcatagctttcaatacaggtcctagaagttgttt |
13204431 |
T |
|
| Q |
202 |
aggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcaccctgtaaccccaa |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || | ||||||||||||||||||||||||| |
|
|
| T |
13204430 |
gggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaattttcacataaagatagtggaaggtcaccctgtaaccccaa |
13204333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 30368128 - 30368424
Alignment:
| Q |
1 |
tgatatactacctagtgaagagcgtgttagtccaaatacaaagttaatttattctatgtattctatgggaaggatggaacaaatatggggagaagactgc |
100 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||| ||||||||||| ||| ||||| ||||||||||||||||| |||||||||||||||| ||| |
|
|
| T |
30368128 |
tgatatactacctagtggagagaatgttagtccaaataccaagttaatttactctttgtatgctatgggaaggatggaaaaaatatggggagaagattgc |
30368227 |
T |
|
| Q |
101 |
atggaatttaagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcgtagctttcaacacaggacccagaatttgta |
200 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||| ||| | ||||||||||||||||||||||||||| |||||||||| |||||||| |||| ||||| |
|
|
| T |
30368228 |
atggaatttaagcctgagagatgggtatcagagagaggacacattatacatgtaccatcttacaagttcatagctttcaatacaggacctagaagttgta |
30368327 |
T |
|
| Q |
201 |
taggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcaccctgtaacccc |
297 |
Q |
| |
|
| |||||||||||||||||| |||||||||||||||| |||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30368328 |
tgggtaaagatcttagtttcgttcaaatgaagatggttgcagctgccttgttatggaagtttcacatacaggtcgtggaaggtcaccctgtaacccc |
30368424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 2 - 307
Target Start/End: Complemental strand, 13101171 - 13100867
Alignment:
| Q |
2 |
gatatactacctagtgaagagcgtgttagtccaaatacaaagttaatttattctatgtattctatgggaaggatggaacaaatatggggagaagactgca |
101 |
Q |
| |
|
|||||||| ||||||| ||||||| ||||||||||||||| |||| | || ||| |||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13101171 |
gatatacttcctagtggagagcgttttagtccaaatacaaggttattgtactctttgtacgctatgggaaggatggaacaaatatggggagaagactgca |
13101072 |
T |
|
| Q |
102 |
tggaatttaagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcgtagctttcaacacaggacccagaatttgtat |
201 |
Q |
| |
|
||||||||||||||||||||||| | || ||||| ||| | ||||||||||||||||||||||||||| |||||||||| ||||||| |||| |||||| |
|
|
| T |
13101071 |
tggaatttaagcctgagagatgggtgtcagagagaggacacattatacatgtaccatcttacaagttcatagctttcaa-tcaggacctagaagttgtat |
13100973 |
T |
|
| Q |
202 |
aggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcaccctgtaaccccaagg |
301 |
Q |
| |
|
||||| ||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| | | |
|
|
| T |
13100972 |
gggtaaggatattagcttcattcaaatgaagatggtcgcagctgctttgttaccgaagtttcacatacaggtggtggaaggtcaccctataaccccgaag |
13100873 |
T |
|
| Q |
302 |
ctttct |
307 |
Q |
| |
|
|||||| |
|
|
| T |
13100872 |
ctttct |
13100867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 2 - 307
Target Start/End: Complemental strand, 13007371 - 13007066
Alignment:
| Q |
2 |
gatatactacctagtgaagagcgtgttagtccaaatacaaagttaatttattctatgtattctatgggaaggatggaacaaatatggggagaagactgca |
101 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |||| | || ||| |||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13007371 |
gatatactacctagtggagagcgtgttagtccaaatacaaggttattgtactctttgtacgctatgggaaggatggaacaaatatggggagaagactgca |
13007272 |
T |
|
| Q |
102 |
tggaatttaagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcgtagctttcaacacaggacccagaatttgtat |
201 |
Q |
| |
|
||||||||||||||||||||||| | || ||||| ||| | ||||||||||||||||||||||||||| |||||||||| ||||| || |||| |||||| |
|
|
| T |
13007271 |
tggaatttaagcctgagagatgggtgtcagagagaggacacattatacatgtaccatcttacaagttcatagctttcaatacaggtcctagaagttgtat |
13007172 |
T |
|
| Q |
202 |
aggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcaccctgtaaccccaagg |
301 |
Q |
| |
|
|| || ||| |||| |||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||| |||||||||| ||||||| | | |
|
|
| T |
13007171 |
gggcaaggatattagcttcattcaaatgaagatggtcgcagcagctttgttaccaaagtttcacataaaggtggtggcaggtcaccctataaccccgaag |
13007072 |
T |
|
| Q |
302 |
ctttct |
307 |
Q |
| |
|
|||||| |
|
|
| T |
13007071 |
ctttct |
13007066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 13244541 - 13244834
Alignment:
| Q |
1 |
tgatatactacctagtgaagagcgtgttagtccaaatacaaagttaatttattctatgtattctatgggaaggatggaacaaatatggggagaagactgc |
100 |
Q |
| |
|
||||||||||||||||| ||| | |||| |||||||||||||||| || |||||| ||||| | |||||||||||| |||||||||||||||| || ||| |
|
|
| T |
13244541 |
tgatatactacctagtggagaacatgttggtccaaatacaaagttgatatattctttgtatgcaatgggaaggatgcaacaaatatggggagatgattgc |
13244640 |
T |
|
| Q |
101 |
atggaatttaagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcgtagctttcaacacaggacccagaatttgta |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||| | || |||| |||||| ||||||| |||||||||||| |||||||||| |||| || |||| ||||| |
|
|
| T |
13244641 |
ttggaatttaagcctgaaagatggatatcagctagaggagggattataaatgtaccgtcttacaagttcatagctttcaatgcaggtcctagaagttgta |
13244740 |
T |
|
| Q |
201 |
taggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcaccctgtaac |
294 |
Q |
| |
|
| || ||||||||||| ||| |||||||||| ||||| |||||| |||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
13244741 |
ttgggaaagatcttagcttcgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtcaccctgtaac |
13244834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 2 - 286
Target Start/End: Original strand, 12963896 - 12964180
Alignment:
| Q |
2 |
gatatactacctagtgaagagcgtgttagtccaaatacaaagttaatttattctatgtattctatgggaaggatggaacaaatatggggagaagactgca |
101 |
Q |
| |
|
|||||| ||||||||| ||| | ||||||||||||||||||||| || |||||| ||||| | |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
12963896 |
gatatattacctagtggagaccatgttagtccaaatacaaagttgatatattctttgtatgcaatgggaaggatggaacaaatatggggagaagattgct |
12963995 |
T |
|
| Q |
102 |
tggaatttaagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcgtagctttcaacacaggacccagaatttgtat |
201 |
Q |
| |
|
|||||||||||||||| ||||||||||| | || ||||| |||||||| || |||||||| |||||| |||| ||||| |||| || |||| |||||| |
|
|
| T |
12963996 |
tggaatttaagcctgaaagatggatatcaaatagaggagaaattatacaagtgccatcttataagttcatagcattcaatgcaggtcctagaagttgtat |
12964095 |
T |
|
| Q |
202 |
aggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcac |
286 |
Q |
| |
|
|| |||||| |||| || |||||||||| ||||| || ||| | |||| ||||||||||||| | ||||||||||||||| |
|
|
| T |
12964096 |
tgggaaagatattagctttgttcaaatgaaaatggttgctgctaatgtgttgtggaagtttcacatagaagtggtggaaggtcac |
12964180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 2 - 286
Target Start/End: Original strand, 19279189 - 19279473
Alignment:
| Q |
2 |
gatatactacctagtgaagagcgtgttagtccaaatacaaagttaatttattctatgtattctatgggaaggatggaacaaatatggggagaagactgca |
101 |
Q |
| |
|
|||||||||||||||| ||| | |||||||| ||||||||||||||| || ||| ||||| | |||||||||||||||||||||||||| || || ||| |
|
|
| T |
19279189 |
gatatactacctagtggagaccatgttagtctaaatacaaagttaatatactctttgtatgcaatgggaaggatggaacaaatatggggtgatgattgcc |
19279288 |
T |
|
| Q |
102 |
tggaatttaagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcgtagctttcaacacaggacccagaatttgtat |
201 |
Q |
| |
|
| |||||| |||||||||||||||||| || || ||| | ||||||||||||||||| ||||||||| |||| || || |||| || |||| ||| | |
|
|
| T |
19279289 |
tagaatttcggcctgagagatggatatcggatagaggacaaattatacatgtaccatcgtacaagttcatagcgtttaatgcaggtccgagaagctgtct |
19279388 |
T |
|
| Q |
202 |
aggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcac |
286 |
Q |
| |
|
|| |||||| ||| |||| |||||||||| ||||| ||||||||| | ||| |||||||| ||||||||| |||||||||||| |
|
|
| T |
19279389 |
cggaaaagatattactttccttcaaatgaaaatggttgcagctgctgtattatggaagtttcgcatacaggtcgtggaaggtcac |
19279473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 2 - 286
Target Start/End: Original strand, 13080886 - 13081170
Alignment:
| Q |
2 |
gatatactacctagtgaagagcgtgttagtccaaatacaaagttaatttattctatgtattctatgggaaggatggaacaaatatggggagaagactgca |
101 |
Q |
| |
|
|||| ||| ||||||| ||| | |||||||||||||||||||||||| |||||| ||||| | |||||||||||||| |||||||||||||| || ||| |
|
|
| T |
13080886 |
gataaacttcctagtggagaccatgttagtccaaatacaaagttaatatattctttgtatgcaatgggaaggatggagcaaatatggggagaggattgct |
13080985 |
T |
|
| Q |
102 |
tggaatttaagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcgtagctttcaacacaggacccagaatttgtat |
201 |
Q |
| |
|
|||| ||||||||||||||||||||||| || || ||| | |||||||| || || ||||| |||||| |||| || || |||| || |||| ||| | |
|
|
| T |
13080986 |
tggagtttaagcctgagagatggatatcagatagaggacaaattatacaagtgccgtcttataagttcatagcgtttaatgcaggtccaagaagctgtct |
13081085 |
T |
|
| Q |
202 |
aggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcac |
286 |
Q |
| |
|
|| |||||| ||||||| |||||||||| ||||| |||||||| | ||| ||||||||||| |||||||||||||||||| |
|
|
| T |
13081086 |
tgggaaagatattagttttcttcaaatgaaaatggttgcagctgcagttttatttaagtttcacattcaggtggtggaaggtcac |
13081170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 13271758 - 13271474
Alignment:
| Q |
1 |
tgatatactacctagtgaagagcgtgttagtccaaatacaaagttaatttattctatgtattctatgggaaggatggaacaaatatggggagaagactgc |
100 |
Q |
| |
|
||||||||||||||||| | | | |||| ||||||| ||||||||||| || ||| ||||| | |||||||| |||||||| ||||||| | || ||| |
|
|
| T |
13271758 |
tgatatactacctagtggacaccatgttggtccaaacacaaagttaatatactctttgtatgcaatgggaagaatggaacatgtatggggtggtgattgc |
13271659 |
T |
|
| Q |
101 |
atggaatttaagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcgtagctttcaacacaggacccagaatttgta |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||| || | ||| | ||||||||||||||||||||||||||| |||| ||||| |||| || |||| ||| |
|
|
| T |
13271658 |
ttggagtttaagcctgagagatggatatcagataaaggacaaattatacatgtaccatcttacaagttcatagcattcaatgcaggtcctagaagctgtc |
13271559 |
T |
|
| Q |
201 |
taggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtca |
285 |
Q |
| |
|
| || |||||| |||| || ||||||||||| ||||| |||||| || | ||| ||||||||||||||| |||||||||||||| |
|
|
| T |
13271558 |
ttgggaaagatattagctttattcaaatgaaaatggttgcagcttctgtattatggaagtttcacatacatgtggtggaaggtca |
13271474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 13065233 - 13065539
Alignment:
| Q |
1 |
tgatatactacctagtgaagagcgtgttagtccaaatacaaagttaatttattctatgtattctatgggaaggatggaacaaatatggggagaagactgc |
100 |
Q |
| |
|
||||||||| ||||||| || | ||| ||||||||||||| | || | || | | ||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
13065233 |
tgatatacttcctagtggagtccatgtaagtccaaatacaaggatattatactatttgtattcaatgggaaggatggagaaaatatggggagaagactgc |
13065332 |
T |
|
| Q |
101 |
atggaatttaagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcgtagctttcaacacaggacccagaatttgta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| | || ||| | |||||||||||||| |||||||||||| |||||||||| |||| || |||| |||| |
|
|
| T |
13065333 |
atggaatttaagcctgagagatggatatcaaaaagcggacaaattatacatgtaccgtcttacaagttcatagctttcaatgcagggccaagaagttgtt |
13065432 |
T |
|
| Q |
201 |
taggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcaccctgtaaccccaag |
300 |
Q |
| |
|
| ||||||||| | | ||| || |||||||||||| || || ||| | || ||||||| |||||| | ||||| ||||| |||||||| ||||| |
|
|
| T |
13065433 |
tgggtaaagatatcaccttcgttgaaatgaagatggctgccgcggctatactatggaagttttgcatacatttagtggatggtcatcctgtaactccaag |
13065532 |
T |
|
| Q |
301 |
gctttct |
307 |
Q |
| |
|
||||||| |
|
|
| T |
13065533 |
gctttct |
13065539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 13086279 - 13085980
Alignment:
| Q |
1 |
tgatatactacctagtgaagagcgtgttagtccaaatacaaagttaatttattctatgtattctatgggaaggatggaacaaatatggggagaagactgc |
100 |
Q |
| |
|
||||||||||||||||| ||| ||||| |||||||| |||||||| || ||| ||||| | |||||||||||| ||||||||||||| | || || |
|
|
| T |
13086279 |
tgatatactacctagtggagattatgttaaaccaaatactaagttaatatactctttgtatgcaatgggaaggatgaaacaaatatggggtaaggatcgc |
13086180 |
T |
|
| Q |
101 |
atggaatttaagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcgtagctttcaacacaggacccagaatttgta |
200 |
Q |
| |
|
| ||||||||||| |||||||||||||| || | ||| ||||| | ||||||||||||| ||||||| |||| || || |||| || ||| |||| |
|
|
| T |
13086179 |
ttcgaatttaagcccgagagatggatatcagataaaggacatattttgcatgtaccatcttgcaagttcatagcatttaatgcaggtcctcgaagttgtc |
13086080 |
T |
|
| Q |
201 |
taggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcaccctgtaaccccaag |
300 |
Q |
| |
|
| || |||||| |||| | |||||||||| ||||| ||||||||| ||||| ||||||||||||||| || ||||||||||| ||||||| ||||| |
|
|
| T |
13086079 |
ttgggaaagatattagcattgttcaaatgaaaatggttgcagctgctatgttatggaagtttcacatacaagttgtggaaggtcattctgtaactccaag |
13085980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 207 - 285
Target Start/End: Complemental strand, 13010739 - 13010661
Alignment:
| Q |
207 |
aagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtca |
285 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| ||||||| ||| |||| |||||| |||||||||||||| |
|
|
| T |
13010739 |
aagatcttagtttcattctaatgaagatggtcgcagctgatttgttatggaaatttcgcatacaagtggtggaaggtca |
13010661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 163 - 235
Target Start/End: Original strand, 31380253 - 31380325
Alignment:
| Q |
163 |
caagttcgtagctttcaacacaggacccagaatttgtataggtaaagatcttagtttcattcaaatgaagatg |
235 |
Q |
| |
|
||||||| || ||||||| ||||||||| ||| |||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
31380253 |
caagttcatatctttcaatacaggacccggaagttgtattggtaaagatcttagtttcattcaaattaagatg |
31380325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 135
Target Start/End: Original strand, 377572 - 377624
Alignment:
| Q |
83 |
atatggggagaagactgcatggaatttaagcctgagagatggatatctgagag |
135 |
Q |
| |
|
|||||||||||||| ||| |||| || ||||| |||||||||||||||||||| |
|
|
| T |
377572 |
atatggggagaagattgcttggagttcaagccagagagatggatatctgagag |
377624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 168
Target Start/End: Complemental strand, 346930 - 346845
Alignment:
| Q |
83 |
atatggggagaagactgcatggaatttaagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagtt |
168 |
Q |
| |
|
||||||||| |||| || |||| || ||||| |||||||||||||||||||| |||| ||| | ||| ||||||||||||||| |
|
|
| T |
346930 |
atatggggaaaagattgtttggagttcaagccagagagatggatatctgagagaggaggcattgttcatacaccatcttacaagtt |
346845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 168
Target Start/End: Complemental strand, 355589 - 355504
Alignment:
| Q |
83 |
atatggggagaagactgcatggaatttaagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagtt |
168 |
Q |
| |
|
||||||||| |||| || |||| || ||||| |||||||||||||||||||| |||| ||| | ||| ||||||||||||||| |
|
|
| T |
355589 |
atatggggaaaagattgtttggagttcaagccagagagatggatatctgagagaggaggcattgttcatacaccatcttacaagtt |
355504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 126
Target Start/End: Complemental strand, 12164365 - 12164320
Alignment:
| Q |
81 |
aaatatggggagaagactgcatggaatttaagcctgagagatggat |
126 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||| ||||| ||||| |
|
|
| T |
12164365 |
aaatatggggagaagattgcttggaatttaagccagagaggtggat |
12164320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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