View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8878_low_9 (Length: 253)

Name: NF8878_low_9
Description: NF8878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8878_low_9
NF8878_low_9
[»] chr4 (5 HSPs)
chr4 (14-243)||(1600758-1600987)
chr4 (66-147)||(55908337-55908418)
chr4 (65-223)||(3438186-3438343)
chr4 (66-147)||(1527812-1527893)
chr4 (67-119)||(641321-641373)
[»] chr6 (5 HSPs)
chr6 (66-136)||(7993805-7993875)
chr6 (36-142)||(6588949-6589055)
chr6 (72-138)||(6596567-6596633)
chr6 (105-225)||(8913599-8913723)
chr6 (66-138)||(6432557-6432629)
[»] chr2 (1 HSPs)
chr2 (66-147)||(1037273-1037354)
[»] scaffold0262 (1 HSPs)
scaffold0262 (66-147)||(326-407)
[»] chr1 (2 HSPs)
chr1 (98-226)||(19468038-19468166)
chr1 (67-175)||(33160914-33161022)
[»] scaffold0014 (1 HSPs)
scaffold0014 (36-95)||(89137-89196)
[»] chr5 (1 HSPs)
chr5 (36-147)||(28532084-28532195)
[»] chr8 (1 HSPs)
chr8 (37-147)||(17627668-17627778)


Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 14 - 243
Target Start/End: Original strand, 1600758 - 1600987
Alignment:
Q  14 caatatttgcgcatgccattacgatctcattaagtaaaggacacttctcattgagtgcaaacaaggctgattctgtgagcatactacattcactaaggtt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1600758 caatatttgcgcatgccattacgatctcattaagtaaaggacacttctcattgagtgcaaacaaggctgattctgtgagcatactacattcactaaggtt 1600857  T
Q  114 tatagaaaccaaatcaccaagaaacgaagtcaacagggcaacatggcgatctttcaaaaaatcggctcttttaagaaccaaatgttggatacgttgacac 213  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1600858 tatagaaaccaaatcaccaagaaacgaagtcaacaaggcaacatggcgatctttcaaaaaatcggctcttttaagaaccaaatgttggatacgttgacac 1600957  T
Q  214 ttggataacaaactaactactccagtataa 243  Q
    |||||||||||||||||||||||| |||||    
T  1600958 ttggataacaaactaactactccaatataa 1600987  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 66 - 147
Target Start/End: Complemental strand, 55908418 - 55908337
Alignment:
Q  66 gagtgcaaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaagaaacgaagtcaac 147  Q
    ||||||||||| ||| || ||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||| ||||    
T  55908418 gagtgcaaacatggccgagtctgtgagcatgctacattcactaaggtttatagacaccaaatcaccaagaaacaaagacaac 55908337  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 223
Target Start/End: Complemental strand, 3438343 - 3438186
Alignment:
Q  65 tgagtgcaaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaagaaacgaagtcaacagggcaacatggcgatc 164  Q
    |||||| ||| |||||| ||| |||||||||   ||| ||||||||||||||||| |||||||||||| |||||   | ||||  | |||||||||||||    
T  3438343 tgagtgaaaataaggctaattttgtgagcatcgaacaatcactaaggtttatagacaccaaatcaccatgaaacatggacaacttgacaacatggcgatc 3438244  T
Q  165 tttcaaaaaatcggctcttttaagaaccaaatgttggatacgttgacacttggataaca 223  Q
     || | ||| |  | | ||| |||| |||||||||| |||| |||||||||||||||||    
T  3438243 atttagaaagtaag-tttttgaagatccaaatgttgtatacattgacacttggataaca 3438186  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 147
Target Start/End: Complemental strand, 1527893 - 1527812
Alignment:
Q  66 gagtgcaaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaagaaacgaagtcaac 147  Q
    |||||||||||||||| | | ||||||  ||  ||||| ||||| ||||||||| | |||||||| ||||||||||| ||||    
T  1527893 gagtgcaaacaaggctaaatgtgtgaggctatcacatttactaatgtttatagacaacaaatcactaagaaacgaagacaac 1527812  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 119
Target Start/End: Original strand, 641321 - 641373
Alignment:
Q  67 agtgcaaacaaggctgattctgtgagcatactacattcactaaggtttataga 119  Q
    ||||||||||||| ||||| ||||||| ||| ||| | |||||||||||||||    
T  641321 agtgcaaacaaggttgattttgtgagcttaccacaatgactaaggtttataga 641373  T

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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 7993875 - 7993805
Alignment:
Q  66 gagtgcaaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaagaa 136  Q
    ||||| |||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||    
T  7993875 gagtgaaaacaaggctgattctgtgagcatccgacattcactaaggtttatagacaccaaatcaccaagaa 7993805  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 142
Target Start/End: Complemental strand, 6589055 - 6588949
Alignment:
Q  36 gatctcattaagtaaaggacacttctcattgagtgcaaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaaga 135  Q
    |||||||  ||||||||||||||||  |   ||||||||||| ||||||||||||| | |||| || | |||||||||||  || |||||||||||||||    
T  6589055 gatctcaccaagtaaaggacacttcctagcaagtgcaaacaaagctgattctgtgatcttactgcaattactaaggtttacggacaccaaatcaccaaga 6588956  T
Q  136 aacgaag 142  Q
    || ||||    
T  6588955 aaggaag 6588949  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 138
Target Start/End: Complemental strand, 6596633 - 6596567
Alignment:
Q  72 aaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaagaaac 138  Q
    ||||| |||||||||||||||| |   ||| | | ||||||||||||||||||||||||||||||||    
T  6596633 aaacacggctgattctgtgagccttgaacaatgattaaggtttatagaaaccaaatcaccaagaaac 6596567  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 225
Target Start/End: Complemental strand, 8913723 - 8913599
Alignment:
Q  105 actaaggtttatagaaaccaaatcaccaagaaacgaagtcaacagggcaacatggcgatctttcaaa----aaatcggctcttttaagaaccaaatgttg 200  Q
    ||||||||||||||| ||||||| |||||||||| ||| ||||  | |||||||  |||| |||| |    ||||  |  || |||||||||||||||||    
T  8913723 actaaggtttatagacaccaaattaccaagaaacaaagacaacttgacaacatgttgatcattcatatataaaataagtgctattaagaaccaaatgttg 8913624  T
Q  201 gatacgttgacacttggataacaaa 225  Q
     | || |||||||||||||||||||    
T  8913623 taaacattgacacttggataacaaa 8913599  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 138
Target Start/End: Original strand, 6432557 - 6432629
Alignment:
Q  66 gagtgcaaacaaggctgattctgtgagcata-ctacattcactaaggtttatagaaaccaaatcaccaagaaac 138  Q
    ||||| ||||| ||||||||||||||| ||| | ||| | ||||||||||||||| ||||||||| ||||||||    
T  6432557 gagtgaaaacagggctgattctgtgag-atatcgacaattactaaggtttatagacaccaaatcagcaagaaac 6432629  T

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Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 66 - 147
Target Start/End: Complemental strand, 1037354 - 1037273
Alignment:
Q  66 gagtgcaaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaagaaacgaagtcaac 147  Q
    ||||||||||| ||| || ||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||| ||||    
T  1037354 gagtgcaaacatggccgagtctgtgagcatgctacattcactaaggtttatagacaccaaatcaccaagaaacaaagacaac 1037273  T

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Target: scaffold0262 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 66 - 147
Target Start/End: Original strand, 326 - 407
Alignment:
Q  66 gagtgcaaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaagaaacgaagtcaac 147  Q
    ||||||||||| || ||| | ||||||||| |||||||||||||| |||||||| |||||||| ||||||||| ||| ||||    
T  326 gagtgcaaacatggttgagtatgtgagcatgctacattcactaagatttatagacaccaaatcgccaagaaacaaagacaac 407  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 226
Target Start/End: Complemental strand, 19468166 - 19468038
Alignment:
Q  98 tacattcactaaggtttatagaaaccaaatcaccaagaaacgaagtcaacagggcaacatggcgatctttcaaaaaatcggctcttttaagaaccaaatg 197  Q
    |||||||||||||||||||||| || ||||||||||||||| ||| ||||    |||||| | |||| ||||||||  | || | || |||| |||||||    
T  19468166 tacattcactaaggtttatagacactaaatcaccaagaaacaaagacaacttatcaacatagtgatcattcaaaaacccagcacgttgaagatccaaatg 19468067  T
Q  198 ttggatacgttgacacttggataacaaac 226  Q
    ||| | || |  |||||||||||||||||    
T  19468066 ttgcaaacctgcacacttggataacaaac 19468038  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 175
Target Start/End: Original strand, 33160914 - 33161022
Alignment:
Q  67 agtgcaaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaagaaacgaagtcaacagggcaacatggcgatctt 166  Q
    |||| |||||| ||||||||||||||| | | |||| || ||||||||||||| |||||| || |||||||| |||  |||  |||||||||  |||| |    
T  33160914 agtgaaaacaatgctgattctgtgagcctccaacatccattaaggtttatagacaccaaagcagcaagaaacaaagagaactcggcaacatgttgatcat 33161013  T
Q  167 tcaaaaaat 175  Q
    ||| |||||    
T  33161014 tcagaaaat 33161022  T

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Target: scaffold0014 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 95
Target Start/End: Original strand, 89137 - 89196
Alignment:
Q  36 gatctcattaagtaaaggacacttctcattgagtgcaaacaaggctgattctgtgagcat 95  Q
    ||||||| | ||| ||||| | |||| ||||||||||||||||||||| |||||||||||    
T  89137 gatctcactgagtgaaggatagttctaattgagtgcaaacaaggctgagtctgtgagcat 89196  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 147
Target Start/End: Original strand, 28532084 - 28532195
Alignment:
Q  36 gatctcattaagtaaaggacacttctcattgagtgcaaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaaga 135  Q
    |||||||  |||||||||||| |||  |  |||||||||||| | ||||||||| ||| ||  ||| | ||||||||| || || | |||||||||||||    
T  28532084 gatctcaccaagtaaaggacagttcctagcgagtgcaaacaaagatgattctgttagcttatcacaattactaaggttgatggacatcaaatcaccaaga 28532183  T
Q  136 aacgaagtcaac 147  Q
    ||||||| ||||    
T  28532184 aacgaagacaac 28532195  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 147
Target Start/End: Complemental strand, 17627778 - 17627668
Alignment:
Q  37 atctcattaagtaaaggacacttctcattgagtgcaaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaagaa 136  Q
    |||||||||||| ||||||| ||   |  ||||| |||||||||||||||   |||||| | ||| | ||||||||||| ||| ||||||| ||||||||    
T  17627778 atctcattaagtgaaggacatttactaacgagtgaaaacaaggctgattcgtcgagcatccgacaataactaaggtttacagacaccaaattaccaagaa 17627679  T
Q  137 acgaagtcaac 147  Q
    | |||| ||||    
T  17627678 atgaagacaac 17627668  T

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