View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8879_1 (Length: 790)
Name: NF8879_1
Description: NF8879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8879_1 |
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Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 320 - 769
Target Start/End: Complemental strand, 43879685 - 43879249
Alignment:
| Q |
320 |
ttggaactttatgcccagaataaagttgagatactctccctgtatttgtacgcattgaattaattacttttaatttgccatatgctacaaatttaagatc |
419 |
Q |
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| T |
43879685 |
ttggaactttatgcccagaataaagttgagatactctccctgtatttgtacgcattgaattaattacttttattttgccctatgctacaaatttaagatc |
43879586 |
T |
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| Q |
420 |
ttttaagacttcatctcactcgactgttctctcaccttatcaaacaccttaataagatttgaaaccatagattcaaataaagctttcaagatggaaaaaa |
519 |
Q |
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| T |
43879585 |
ttttaagacttcatttcatttg--tgttctctcaccttatcaaacaccttaataagatttgaaactatagattcaaataaagctttcaagatggaaaaaa |
43879488 |
T |
|
| Q |
520 |
ttcttatagatgaatgacattataaattcaattcaattcatgcataaagttt-aatataggtgaaattcaaaccaaacaaactcaaactcttcaacatac |
618 |
Q |
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| T |
43879487 |
ttcttatagatgaatgacattataaattcaattca-----tgcataaagttttaatataggtgaaattcaaaccaaacaaactcaaactcttcaacatac |
43879393 |
T |
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| Q |
619 |
atactagttgaagtaaaatatatagaagtcacacnnnnnnntggtgaaagtaaaacagatttcattcatatacaccacaagaattaagatttatattatt |
718 |
Q |
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| T |
43879392 |
atactagttgaagtaaaata----gaagtcacacaaaaaaatggtgaaagtaaaacagatttcattcatatacaccacaagaattaagatttata---tt |
43879300 |
T |
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| Q |
719 |
atctacaacctgattgatccaaatcttccctttgactttgatcgtttgatg |
769 |
Q |
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| T |
43879299 |
atctacaacctgattgatccaaatcttccctttgactttgatcgtttgatg |
43879249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 188 - 261
Target Start/End: Complemental strand, 43879774 - 43879701
Alignment:
| Q |
188 |
cacatgccatactgaaacaataaccaattaagaaggtgcctctatttctatttcaaatatgcacacgacacgac |
261 |
Q |
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| T |
43879774 |
cacatgccatactgaaacaataaccaattaagaaggtgcctctatttctatttcaaatatgcacacgacacgac |
43879701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 29 - 133
Target Start/End: Complemental strand, 43879958 - 43879856
Alignment:
| Q |
29 |
catgtgtcgtgaatggtgataattctcaatctcaaggaaccttcttagtaggaggatgtgtagctcgattgattga----gctaactgattgaatgagta |
124 |
Q |
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| T |
43879958 |
catgtgtggtgaatggtgataattctcaa------ggaaccttgttagtaggaggatgtgcagctcgattgattgagctagctaactgattgaatgagta |
43879865 |
T |
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| Q |
125 |
tttagttaa |
133 |
Q |
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| T |
43879864 |
tgtagttaa |
43879856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 683 - 742
Target Start/End: Complemental strand, 1894073 - 1894015
Alignment:
| Q |
683 |
ttcatatacaccacaagaattaagatttatattattatctacaacctgattgatccaaat |
742 |
Q |
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| T |
1894073 |
ttcatatacaccacaagaattaagatttatgcta-tatctacaacctggttgatctaaat |
1894015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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