View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8879_4 (Length: 325)
Name: NF8879_4
Description: NF8879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8879_4 |
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Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 33115510 - 33115200
Alignment:
| Q |
1 |
ttcggtcatattcataggaactggtgaacatatggatgagtttgaagtttttgaagttaagccgtttgttagttctctattaggcatggatgactggtat |
100 |
Q |
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| T |
33115510 |
ttcggtcatattcataggaactggtgaacatatggatgagtttgaagtttttgaagttaagccgtttgttagttctctattaggcatggatgactggtat |
33115411 |
T |
|
| Q |
101 |
gagtttattgacagagtttatgaagtgcctgaattgcctctgaacctgccagaaagaaaaatctggatgcctccacgtgcgtttttccctccatcgttgc |
200 |
Q |
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| T |
33115410 |
gagtttattgatagagtttatgaagtgcctgaattgcctctgaacctgccagaaagaaaaatctggatgcctccacgtgcgtttttccctccatcgttgc |
33115311 |
T |
|
| Q |
201 |
accacttgtttgacgactgagaccttctaagggatttcatttcctttattagcaacttcacatactgaattaatcccaaactcatactgaatttctgcaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
33115310 |
accacttgtttgacgactgagaccttctaagggatttcacttcctttattagcaacttcacataccgaattaatcccaaactcataccgaatttctgcaa |
33115211 |
T |
|
| Q |
301 |
gtgcttaagtt |
311 |
Q |
| |
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||||||||||| |
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| T |
33115210 |
gtgcttaagtt |
33115200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 5 - 213
Target Start/End: Complemental strand, 33167223 - 33167015
Alignment:
| Q |
5 |
gtcatattcataggaactggtgaacatatggatgagtttgaagtttttgaagttaagccgtttgttagttctctattaggcatggatgactggtatgagt |
104 |
Q |
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||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||| |||||||| |||| |
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| T |
33167223 |
gtcatattcatagcaaccggtgaacatatggatgagtttgaagcttttgaagttaagtcgtttgttagtcgtctattaggcatgggtgactggtccgagt |
33167124 |
T |
|
| Q |
105 |
ttattgacagagtttatgaagtgcctgaattgcctctgaacctgccagaaagaaaaatctggatgcctccacgtgcgtttttccctccatcgttgcacca |
204 |
Q |
| |
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|||| |||| |||||||||||||||||||||||||| ||| ||||||||||||||||| | ||| ||| || ||||| ||||||||||||||| | |
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| T |
33167123 |
ttatggacaaagtttatgaagtgcctgaattgcctcaaaacttgccagaaagaaaaatccgccgaccttcactagcattttttcctccatcgttgcacaa |
33167024 |
T |
|
| Q |
205 |
cttgtttga |
213 |
Q |
| |
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||| ||||| |
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| T |
33167023 |
cttttttga |
33167015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 44827196 - 44827275
Alignment:
| Q |
5 |
gtcatattcataggaactggtgaacatatggatgagtttgaagtttttgaagttaagccgtttgttagttctctattagg |
84 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||| ||||||||| |
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| T |
44827196 |
gtcatattcataggaactggtgaacatatggatcagtttgaagtatttgaagttcagccgtttgttagtcgtctattagg |
44827275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 44834933 - 44834977
Alignment:
| Q |
216 |
actgagaccttctaagggatttcatttcctttattagcaacttca |
260 |
Q |
| |
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||||||| |||||||||||||||| |||||||| ||||||||||| |
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| T |
44834933 |
actgagagcttctaagggatttcacttcctttactagcaacttca |
44834977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 2203255 - 2203176
Alignment:
| Q |
5 |
gtcatattcataggaactggtgaacatatggatgagtttgaagtttttgaagttaagccgtttgttagttctctattagg |
84 |
Q |
| |
|
||||||||||| |||||||| ||||| |||||||| |||||||||||||| ||||| || ||||| ||| ||||||||| |
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| T |
2203255 |
gtcatattcattggaactggagaacacatggatgaatttgaagtttttgatgttaaaccatttgtcagtcgtctattagg |
2203176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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