View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8879_low_1 (Length: 304)
Name: NF8879_low_1
Description: NF8879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8879_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 9406609 - 9406900
Alignment:
| Q |
1 |
tttacatttaaaaatatatgccagggccactgtattccatttgatatgcatgcagatgcagctgattgcaaattttggtagcgtctactcccattttcgt |
100 |
Q |
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| T |
9406609 |
tttacatttaaaaatatatgccagggccgctgtattccatttgatatgcatgcagatgcagctaattgcaaattttggtagcgtctactcccattttcgt |
9406708 |
T |
|
| Q |
101 |
catttcagaagagacatacatgcaccataacctctgtgagtgtgagggatgga-caacgcataacatgcaaatataaattaat-----atttgattgatg |
194 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
9406709 |
catttcagaagagacatacatgcaccatgacctctgtgagtgtgagggatggaccaacgcataacatgcaaatataaattaatatttaatttgattgatg |
9406808 |
T |
|
| Q |
195 |
tggagaaatcataagaaatcttgtaatatacattggtagaatgaaagaaaattttgtttacacgaagagttagtctctactattaatgattt |
286 |
Q |
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||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||| |||||| ||| ||||||| |||||| |||| |
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| T |
9406809 |
tggaggaatcataagaattcttgtaatatacattggtagaatgaaggaaaattttgtctactcgaagaattaatctctacaattaataattt |
9406900 |
T |
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