View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8880_high_5 (Length: 236)
Name: NF8880_high_5
Description: NF8880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8880_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 35487273 - 35487494
Alignment:
| Q |
3 |
gaaacctagcatgataccgttcaaacaaattaacacctaaactgaaaactcaatttctcaatcgaatcaatctcatatgtaatattcacgtcatatctca |
102 |
Q |
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| T |
35487273 |
gaaacctagcatgataccgttcaaacaaattaacacctgaactgaaaactcaatttctcaatcgaatcaatctcatatgtaatattctcgtcatatctca |
35487372 |
T |
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| Q |
103 |
ttttgtatacaactagaacaaattaagtatgaacaaatcacttgcttaaacgataaactaagctagaatcaacaatatattagtaacaagattcaggaaa |
202 |
Q |
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| T |
35487373 |
ttttgtatacaactagaacaaattaagtatgaacaaatcacttgcttaaatgataaactaagctagaatcaacaatatattagtaacaagattcaggaaa |
35487472 |
T |
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| Q |
203 |
catattgttgattgtagcatct |
224 |
Q |
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| T |
35487473 |
catattgttgattgtagcatct |
35487494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 35487703 - 35487761
Alignment:
| Q |
119 |
aacaaattaagtatgaacaaatcacttgcttaaacgataaactaagctagaatcaacaa |
177 |
Q |
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| T |
35487703 |
aacaaatcaagcatgaaaaaatcgcttgcttaaacgataaattaaactataatcaacaa |
35487761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 5333130 - 5333047
Alignment:
| Q |
3 |
gaaacctagcatgataccgttcaaacaaattaacacctaaactgaaaactcaatttctcaatcgaatcaatctcatatgtaata |
86 |
Q |
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| T |
5333130 |
gaaacctagcatgatacggttcaaataaattaacacctgaaccgaaaactcaatttctcaattgaatcaatctcataagtaata |
5333047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 38274844 - 38274927
Alignment:
| Q |
3 |
gaaacctagcatgataccgttcaaacaaattaacacctaaactgaaaactcaatttctcaatcgaatcaatctcatatgtaata |
86 |
Q |
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| T |
38274844 |
gaaacctagcaagatacggttcaaacaaattaacacctgaaccgaaaactcaatttctcaattgaatcaatctcataagtaata |
38274927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 29518944 - 29519009
Alignment:
| Q |
21 |
gttcaaacaaattaacacctaaactgaaaactcaatttctcaatcgaatcaatctcatatgtaata |
86 |
Q |
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| T |
29518944 |
gttcaaataaattaacacctgaaccgaaaactcaatttctcaattgaatcaatctcataagtaata |
29519009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 133 - 187
Target Start/End: Original strand, 38274982 - 38275036
Alignment:
| Q |
133 |
gaacaaatcacttgcttaaacgataaactaagctagaatcaacaatatattagta |
187 |
Q |
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||||||||||| | |||||| ||||| |||| ||||||||||||||||||||||| |
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| T |
38274982 |
gaacaaatcaccttcttaaatgataagctaaactagaatcaacaatatattagta |
38275036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 125
Target Start/End: Original strand, 38274946 - 38274989
Alignment:
| Q |
82 |
taatattcacgtcatatctcattttgtatacaactagaacaaat |
125 |
Q |
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| T |
38274946 |
taatattctcgtcacatcacattttgtatacaactagaacaaat |
38274989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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