View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8880_low_1 (Length: 882)

Name: NF8880_low_1
Description: NF8880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8880_low_1
NF8880_low_1
[»] chr3 (1 HSPs)
chr3 (18-870)||(52373397-52374249)


Alignment Details
Target: chr3 (Bit Score: 841; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 841; E-Value: 0
Query Start/End: Original strand, 18 - 870
Target Start/End: Complemental strand, 52374249 - 52373397
Alignment:
Q  18 aataatctctttaaatatattgtttgcttcatggatggcaaacaatagattagaaggtccaatattattaacatttataatacacaagaaaaacataaat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52374249 aataatctctttaaatatattgtttgcttcatggatggcaaacaacagattagaaggtccaatattattaacatttataatacacaagaaaaacataaat 52374150  T
Q  118 acactgatagaatcaggcatcacactgttctcatagatgtgagatcaatgagcttcgagtttctgcacctaaaactgaaccatttatatgattaccattc 217  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52374149 atactgatagaatcaggcatcacactgttctcatagatgtgagatcaatgagcttcgagtttctgcacctaaaactgaaccatttatatgattaccattc 52374050  T
Q  218 ttttccaactccacttttcttattacttcatgttttatcctcataacatcttttccaaacctcatctccatcaaaattttcatttttccatcaagaagct 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  52374049 ttttccaactccacttttcttattacttcatgttttatcctcataacatcttttccaaacctcatctccattaaaattttcatttttccatcaagaagct 52373950  T
Q  318 tctctttagcagcccatctttgcaatttcccagaagtagttttcggaacacattcactcttaaccaaaacaacccatccaacttctacaccctctttctt 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52373949 tctctttagcagcccatctttgcaatttcccagaagtagttttcggaacacattcactcttaaccaaaacaacccatccaacttctacaccctctttctt 52373850  T
Q  418 caaaacactttctttaattccttcgccaacactcctcagaatcccttcatccaaatctttttccatcctttgcatctctgcaacaattacaaccgttgct 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52373849 caaaacactttctttaattccttcgccaacactcctcagaatcccttcatccaaatctttttccatcctttgcatctctgcaacaattacaaccgttgct 52373750  T
Q  518 aaaactttaaaagccgcaacacaacctcctcgtagtaactttgggaaactgttaaaaaccacagtctctatgtaatgtggttgaatcttttcaccatttt 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52373749 aaaactttaaaagccgcaacacaacctcctcgtagtaactttgggaaactgttaaaaaccacagtctctatgtaatgtggttgaatcttttcaccatttt 52373650  T
Q  618 gaagctgtatagtatcttgaattctaccagtaacaaagagatacctgttttctccttttacgattcctttgtcacccgttcgaagaaaacacttacgaac 717  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52373649 gaagctgtatagtatcttgaattctaccagtaacaaagagatacctgttttctccttttacgattcctttgtcacccgttcgaagaaaacacttacgaac 52373550  T
Q  718 tgtgtttctgattcttgcatgaaaaacttctcttgttaaagaagggtgaccaaggtaaccagaggcattacttggagatgaaacccaaatttctccttca 817  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52373549 tgtgtttctgattcttgcatgaaaaacttctcttgttaaagaagggtgaccaaggtaaccagaggcattacttggagatgaaacccaaatttctccttca 52373450  T
Q  818 acaccatcttcaacagcttcaagtgtttcttcattaacaaccatgatgtccat 870  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52373449 acaccatcttcaacagcttcaagtgtttcttcattaacaaccatgatgtccat 52373397  T

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