View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8880_low_2 (Length: 512)
Name: NF8880_low_2
Description: NF8880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8880_low_2 |
 | |
|
| [»] chr3 (5 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 19 - 512
Target Start/End: Original strand, 4149854 - 4150344
Alignment:
| Q |
19 |
gtccagctattagatgtagattcgacctttaatcatcaacactatccacttccctgcgtttcatgtgacactttaacatctcttaccctttgtagaaacg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
4149854 |
gtccagctattagatgtagattcgaccttttattatcaacactatccacttccctacgtttcatgtcacactttaacatctcttaccctttgtacaaaca |
4149953 |
T |
|
| Q |
119 |
atcaattttgttatcattcaccattattcccaacttctctgaatttgcctgcattaaccagcttgtgtctaaaatacttttcctttcatggtagtggtga |
218 |
Q |
| |
|
|||||||| || ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4149954 |
atcaatttggtcatccttcatcattattcccaacttctctgaatttgcctgcattaaccagcttgtgtctaaaatactttgcctttcatggtagtggtga |
4150053 |
T |
|
| Q |
219 |
tgataaccgtgctgagcccttttcgtcatttaacagcttgaaaagtttgatcattcactgttgtgttgaagaacaaaacctgttcatatcaagtgacaca |
318 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4150054 |
tgatgaccgtgctgagcccttttcgtcatttaacagcttgaaaagtttgatcattcactgttgtgttcaagaacaaaacctgttcatatcaagtgacaca |
4150153 |
T |
|
| Q |
319 |
cttgtttagttaagattaatctatacatttactacttatcgatgctgcaaaattgagttatctactccaagtctccgtagctttgattttcagggtaatc |
418 |
Q |
| |
|
|||||||| ||||| |||| |||||||| |||| | | ||| || ||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4150154 |
cttgtttatttaag---aatcaatacatttgttactcaccaatgttggaaaatcgagttatctactccaagtctccgtagctttgattttaagggtaatc |
4150250 |
T |
|
| Q |
419 |
ctgttcagaaactcagtgggaacaataacaatctctcttctataaaacatgtaaaaattgatgtagcagtcccgtcatatatcgaaaaatatcc |
512 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4150251 |
ctattcagaaactcagtgggaacaataacaatctctcttctatcaaacatgtaaaaattgatgtagcagtcccgtcatatatcgaaaaatatcc |
4150344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 19 - 512
Target Start/End: Original strand, 4165626 - 4166113
Alignment:
| Q |
19 |
gtccagctattagatgtagattcgacctttaatcatcaacactatccacttccctgcgtttcatgtgacactttaacatctcttaccctttgtagaaacg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
4165626 |
gtccagctattagatgtagattcgaccttttattatcaacactatccacttccctacgttttatgtcacactttaacatctcttaccctttgtacaaaca |
4165725 |
T |
|
| Q |
119 |
atcaattttgttatcattcaccattattcccaacttctctgaatttgcctgcattaaccagcttgtgtctaaaatacttttcctttcatggtagtggtga |
218 |
Q |
| |
|
|||||||| || ||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4165726 |
atcaatttggtcatccttcatcattattcccaacttctctgaatttgcctgcattaaccagcatgtgtctaaaatactttgcctttcatggtagtggtga |
4165825 |
T |
|
| Q |
219 |
tgataaccgtgctgagcccttttcgtcatttaacagcttgaaaagtttgatcattcactgttgtgttgaagaacaaaacctgttcatatcaagtgacaca |
318 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4165826 |
tgatgaccgtgctgagcccttttcgtcatttaacagcttgaaaagtttgatcattcactgttgtgttgaagaacaaaacctgttcatatcaagtgacaca |
4165925 |
T |
|
| Q |
319 |
cttgtttagttaagattaatctatacatttactacttatcgatgctgcaaaattgagttatctactccaagtctccgtagctttgattttcagggtaatc |
418 |
Q |
| |
|
|||||||| ||||| |||| |||||||| ||| || | | |||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4165926 |
cttgtttatttaag---aatcaatacatttgcta---ttcaacgttgcaaaatcgagttatctactccaagtctccgtagctttgattttaagggtaatc |
4166019 |
T |
|
| Q |
419 |
ctgttcagaaactcagtgggaacaataacaatctctcttctataaaacatgtaaaaattgatgtagcagtcccgtcatatatcgaaaaatatcc |
512 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4166020 |
ctattcagaaactcagtgggaacaataacaatctctcttctatcaaacatgtaaaaattgatgtagcagtcccgtcatatatcgaaaaatatcc |
4166113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 377 - 471
Target Start/End: Complemental strand, 13485418 - 13485324
Alignment:
| Q |
377 |
tatctactccaagtctccgtagctttgattttcagggtaatcctgttcagaaactcagtgggaacaataacaatctctcttctataaaacatgta |
471 |
Q |
| |
|
||||||||||||||||| | | |||||||||||| |||| |||| ||||||||||| ||||| ||| | ||||||||||||||| ||||||||| |
|
|
| T |
13485418 |
tatctactccaagtctctgcacctttgattttcatggtattcctattcagaaactccatgggatcaagagcaatctctcttctatcaaacatgta |
13485324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 471
Target Start/End: Complemental strand, 13490379 - 13490285
Alignment:
| Q |
377 |
tatctactccaagtctccgtagctttgattttcagggtaatcctgttcagaaactcagtgggaacaataacaatctctcttctataaaacatgta |
471 |
Q |
| |
|
|||||||||||||||| ||| |||||| ||||| |||| |||| ||||||||||| | ||| ||| | |||||||||||||| ||||||||| |
|
|
| T |
13490379 |
tatctactccaagtctttgtacctttgagtttcatggtattcctattcagaaactccatcggagcaagagaaatctctcttctattaaacatgta |
13490285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 402
Target Start/End: Original strand, 25597540 - 25597576
Alignment:
| Q |
366 |
caaaattgagttatctactccaagtctccgtagcttt |
402 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
25597540 |
caaaattgagttatctactccaagtctacgtaacttt |
25597576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 383 - 484
Target Start/End: Original strand, 32414267 - 32414368
Alignment:
| Q |
383 |
ctccaagtctccgtagctttgattttcagggtaatcctgttcagaaactcagtgggaacaataacaatctctcttctataaaacatgtaaaaattgatgt |
482 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| |||||||||||||||| |||| ||| | ||||||||||||||| |||||||| |||||||| || |
|
|
| T |
32414267 |
ctccaagtctttgtagctttgattttaggggtattcctgttcagaaactctacgggagcaagagcaatctctcttctatcaaacatgtgaaaattgacgt |
32414366 |
T |
|
| Q |
483 |
ag |
484 |
Q |
| |
|
|| |
|
|
| T |
32414367 |
ag |
32414368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 366 - 470
Target Start/End: Complemental strand, 14288381 - 14288277
Alignment:
| Q |
366 |
caaaattgagttatctactccaagtctccgtagctttgattttcagggtaatcctgttcagaaactcagtgggaacaataacaatctctcttctataaaa |
465 |
Q |
| |
|
|||| ||||| |||| |||||||||||| ||| |||| ||||| ||||| |||| |||| |||||| |||||| || | ||||||||||||||| ||| |
|
|
| T |
14288381 |
caaatttgagctatccactccaagtctctgtaacttttattttaggggtactcctcttcaaaaactccgtgggagtaaaatcaatctctcttctatcaaa |
14288282 |
T |
|
| Q |
466 |
catgt |
470 |
Q |
| |
|
||||| |
|
|
| T |
14288281 |
catgt |
14288277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 158 - 220
Target Start/End: Complemental strand, 43863747 - 43863685
Alignment:
| Q |
158 |
tgaatttgcctgcattaaccagcttgtgtctaaaatacttttcctttcatggtagtggtgatg |
220 |
Q |
| |
|
|||||||||| |||||||||| ||||| | |||| ||||||||||||||| | |||| ||||| |
|
|
| T |
43863747 |
tgaatttgccagcattaaccaccttgtctttaaagtacttttcctttcatcgcagtgatgatg |
43863685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 52187235 - 52187280
Alignment:
| Q |
153 |
ttctctgaatttgcctgcattaaccagcttgtgtctaaaatacttt |
198 |
Q |
| |
|
||||||||||||||| |||||||||| ||||| |||||| |||||| |
|
|
| T |
52187235 |
ttctctgaatttgccagcattaaccaacttgtctctaaagtacttt |
52187280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 213 - 273
Target Start/End: Complemental strand, 7976438 - 7976378
Alignment:
| Q |
213 |
tggtgatgataaccgtgctgagcccttttcgtcatttaacagcttgaaaagtttgatcatt |
273 |
Q |
| |
|
||||||| || | ||||||||||| |||||| ||||||||| ||||| |||||||||||| |
|
|
| T |
7976438 |
tggtgataatgatcgtgctgagcctttttcgacatttaacaagttgaatagtttgatcatt |
7976378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University