View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8880_low_3 (Length: 346)
Name: NF8880_low_3
Description: NF8880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8880_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 15 - 301
Target Start/End: Original strand, 3659355 - 3659640
Alignment:
| Q |
15 |
cacaattatctaaatgccaattaaagtggaacataacaaatccatttatgaatcatatgccaattagacacacagatgagatctaccaattaccaaacaa |
114 |
Q |
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|||| |||||||||| |||||| |||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3659355 |
cacacttatctaaattccaattgaagtggaacataacaaatccatttat-aaccaaatgccaattagacacacagatgagatctaccaattaccaaacaa |
3659453 |
T |
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| Q |
115 |
tctaagtccaatcaaattctcctagaatacaatcaaacattacaaatcaaagggtagacaaagccttacatgaatataatgtaacgacatttcacgtcaa |
214 |
Q |
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|||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3659454 |
tctaagtccaatcaaattgtcctagaatccaatcaaacattacaaatcaaagggtagacaaagccttacatgaatataatgtaatgacatttcacgtcaa |
3659553 |
T |
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| Q |
215 |
aattttcacgcctttactcttcaaatcagttctgctttccattttaagtggcaatggagcagagaacagaatcttctcttggtgtgc |
301 |
Q |
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| T |
3659554 |
aattttcacgcctttactcttcaaatcagttctgctttccattttaagtggcaatggagcagagaacagaatcttctcttggtgtgc |
3659640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 32 - 328
Target Start/End: Original strand, 3653106 - 3653401
Alignment:
| Q |
32 |
caattaaagtggaacataacaaatccatttat-gaatcatatgccaattagacacacagatgagatctaccaattaccaaacaatctaagtccaatcaaa |
130 |
Q |
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| T |
3653106 |
caattgaagtggaacataacaaatccatttatagaaccaaatgccaattagacacgcagatgagatctaccagttaccaaacaatctaagtccagtcaaa |
3653205 |
T |
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| Q |
131 |
ttctcctagaatacaatcaaacattacaaatcaaagggtagacaaagccttacatgaatataatgtaacgacatttcacgtcaaaattttcacgccttta |
230 |
Q |
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| T |
3653206 |
ttctcctagaata--atcaaacattacaaatcaaagggtaaacaaaaccttacatgaatataatgtaacgacatttcacgtcaaaagtttcacgccttta |
3653303 |
T |
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| Q |
231 |
ctcttcaaatcagttctgctttccattttaagtggcaatggagcagagaacagaatcttctcttggtgtgcttgaaactgctctttcactatatctcc |
328 |
Q |
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|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
3653304 |
ctcttcaaatcagttctgctttccattttaagcggcagtggagcagagaacagaatcttctcttggtgtgcttgaaactactctttcactatatctcc |
3653401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 216 - 320
Target Start/End: Original strand, 3649181 - 3649285
Alignment:
| Q |
216 |
attttcacgcctttactcttcaaatcagttctgctttccattttaagtggcaatggagcagagaacagaatcttctcttggtgtgcttgaaactgctctt |
315 |
Q |
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|||||||| | |||||||||||||||||||||||||||||| |||||||||||| || | |||| ||||| |||||| || ||| | |||||||| |||| |
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| T |
3649181 |
attttcacacttttactcttcaaatcagttctgctttccatcttaagtggcaatagaactgagagcagaagcttctcatgatgtacctgaaactgatctt |
3649280 |
T |
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| Q |
316 |
tcact |
320 |
Q |
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||||| |
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| T |
3649281 |
tcact |
3649285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 119 - 318
Target Start/End: Original strand, 3657199 - 3657394
Alignment:
| Q |
119 |
agtccaatcaaattctcctagaatacaatcaaacattacaaatcaaagg---gtagacaaagccttacatgaatataatgtaacgacatttcacgtcaaa |
215 |
Q |
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||||||||||| ||||||||||||||| ||||||||||||||||||| | | ||||||||||| ||| ||||| | | |||||||| || |||| |
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| T |
3657199 |
agtccaatcaagttctcctagaatacagtcaaacattacaaatcaaatgtaaacaaacaaagccttaaatg---ataattttatgacatttcgcgacaaa |
3657295 |
T |
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| Q |
216 |
attttcacgcctttactcttcaaatcagttctgctttccattttaagtggcaatggagcagagaacagaatcttctcttggtgtgcttgaaactgctctt |
315 |
Q |
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| T |
3657296 |
ttgttcacaccattactcttca----agtcttgctctccattttaagcggcaatgcagctgagaacagaagcttctcatgatgtacctgaaactgctctt |
3657391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 274
Target Start/End: Original strand, 36164576 - 36164634
Alignment:
| Q |
216 |
attttcacgcctttactcttcaaatcagttctgctttccattttaagtggcaatggagc |
274 |
Q |
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|||||||| | |||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
36164576 |
attttcacacttttactcttcaaatcagttctgctttccatcttaagcggcaatggagc |
36164634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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