View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8880_low_4 (Length: 293)
Name: NF8880_low_4
Description: NF8880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8880_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 24820614 - 24820808
Alignment:
| Q |
19 |
tcaagtgtattggagtagcccaaatctcaccctcaaatataacttttttgtcttcaacatgttcattattaactatgtggaaggaagatttgttttccct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24820614 |
tcaagtgtattggagtagcccaaatctcaccctcaaatataacttttttgtcttcaacatgttcattattaactatgtggaaggaagatttgttttccct |
24820713 |
T |
|
| Q |
119 |
atgcttgctatcagtaccatcataaatgatatgtggaaggaagaatcaccaatgaagcactttgacaccaacaatgagaggtaaatgagctatta |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24820714 |
atgcttgctatcagtaccatcataaatgatatgtggaaggaagaatcaccaatgaagcactttgacaccaacaatgagaggtaaatgagctatta |
24820808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 111 - 280
Target Start/End: Original strand, 35902332 - 35902498
Alignment:
| Q |
111 |
ttttccctatgcttgctatcagtaccatcataaatgatat-gtggaaggaagaatcaccaatgaagcactttgacaccaacaatgagaggtaaatgagct |
209 |
Q |
| |
|
||||| ||||||||| || ||||||| |||||||||| ||||||||| || |||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
35902332 |
ttttctctatgcttgatacatgtaccattataaatgataacgtggaaggaggagtcaccaatgaagcactatgacaccaacaatgagatgtaaatgagct |
35902431 |
T |
|
| Q |
210 |
attaactatgttttga-taaattaggagctgatgctagactgcaaaatatgtatcttgactgcatttggtct |
280 |
Q |
| |
|
|| |||||||||| || ||| |||||||||||| |||||| |||||||||||| |||| ||||||||| |
|
|
| T |
35902432 |
at----tatgttttgactagatttggagctgatgcttgactgc-aaatatgtatctcgactctatttggtct |
35902498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 152 - 276
Target Start/End: Complemental strand, 1161837 - 1161712
Alignment:
| Q |
152 |
tggaaggaagaatcaccaatgaagcactttgacaccaacaatgagaggtaaatgagctattaactatgttttga-taaattaggagctgatgctagactg |
250 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||| ||||||| |||| ||||||||| | |||||| | ||||||||||| ||||| | ||||| |
|
|
| T |
1161837 |
tggaaggaagaatcaccaatgaagcaatatgacaccaacggtgagaggaaaataagctattaattttgttttaactaaattaggagttgatgtttgactg |
1161738 |
T |
|
| Q |
251 |
caaaatatgtatcttgactgcatttg |
276 |
Q |
| |
|
|||||||| |||||||| |||||| |
|
|
| T |
1161737 |
ggaaatatgtttcttgacttcatttg |
1161712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University