View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8881_high_10 (Length: 275)
Name: NF8881_high_10
Description: NF8881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8881_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 267
Target Start/End: Original strand, 13078996 - 13079244
Alignment:
| Q |
19 |
gtagcgcctttgtgttctgcttcttatcctttgcactcttatattcaaactccttaaatccaatactttctactgttgaatatgtagcagggcctctttc |
118 |
Q |
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| T |
13078996 |
gtagcgcctttgtgttctgcttcttatcctttgcactcttatattcaaactccttaaatccaatactttctactgttgaatatgtagcagggcctctttc |
13079095 |
T |
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| Q |
119 |
acattgcaattctcgttcagacgttcttgtgtctattccttttggatcttttgccttttgtacttgaggttcttcctttgttgtagactcgccaaaaatg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13079096 |
acattgcaattctcgttcagacgttcttgtgtctattccttttggatcttttgccttttgtacttgaggttcttcctttgttgtagactcgccaaaaata |
13079195 |
T |
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| Q |
219 |
aattcatcactctttctttttgcctcttgtcctttcaccttctctgctt |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
13079196 |
aattcatcactctttctttttgcctcttgtcctttcaccttctttgctt |
13079244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 13074792 - 13075032
Alignment:
| Q |
19 |
gtagcgcctttgtgttctgcttcttatcctttgcactcttatattcaaactccttaaatccaatactttctactgttgaatatgtagcagggcctctttc |
118 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
13074792 |
gtagcgcctttgtattctgcttcttatcctttgcactcttatattaaaactccttaaatccaatactttctactgttgaatatgtagaagggcctctttc |
13074891 |
T |
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| Q |
119 |
acattgcaattctcgttcagacgttcttgtgtctattccttttggatcttttgccttttgtacttgaggttcttcctttgttgtagactcgccaaaaatg |
218 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
13074892 |
acattgcaattctcgttcagacgttcttgtatctattccttttaaatcttttgccttttgtacttgaggttcttcctttgttgtagactcaccaaaaata |
13074991 |
T |
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| Q |
219 |
aattcatcactctttctttttgcctcttgtcctttcacctt |
259 |
Q |
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|||||||||| |||||||||||||||| |||||||||||| |
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| T |
13074992 |
aattcatcacaatttctttttgcctcttatcctttcacctt |
13075032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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