View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8881_high_15 (Length: 228)
Name: NF8881_high_15
Description: NF8881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8881_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 20 - 213
Target Start/End: Complemental strand, 8259854 - 8259660
Alignment:
| Q |
20 |
tttggttactcgtctctacaatgatttttctctcacaactgttcctctttataatggttactaacttttgtttctcctctttgatacttatgatataagt |
119 |
Q |
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| T |
8259854 |
tttggttactcgtctctacaatgatttttctctcacaattgttcctctctataatggttactaacttttgtttctcctctttgatacttatgatataagt |
8259755 |
T |
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| Q |
120 |
ttgtttgatttattttcaagagttaatttagcttcagggtattgagtatatattatcgagtttgacaaactctc-atgtttcatattgttgtatc |
213 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
8259754 |
ttgtttgatttattttcaagagttaatttagcttgagggtattgagtatatattatcgagtttgacaaactctcaatgtttcatattattgtatc |
8259660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 20 - 213
Target Start/End: Complemental strand, 8273272 - 8273078
Alignment:
| Q |
20 |
tttggttactcgtctctacaatgatttttctctcacaactgttcctctttataatggttactaacttttgtttctcctctttgatacttatgatataagt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8273272 |
tttggttactcgtctctacaatgatttttctctcacaattgttcctctctataatggttactaacttttgtttctcctctttgatacttatgatataagt |
8273173 |
T |
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| Q |
120 |
ttgtttgatttattttcaagagttaatttagcttcagggtattgagtatatattatcgagtttgacaaactctc-atgtttcatattgttgtatc |
213 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
8273172 |
ttgtttgatttattttcaagagttaatttagcttgagggtattgagtatatattatcgagtttgacaaactctcaatgtttcatattattgtatc |
8273078 |
T |
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