View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8881_high_4 (Length: 414)
Name: NF8881_high_4
Description: NF8881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8881_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 404
Target Start/End: Original strand, 48749403 - 48749802
Alignment:
| Q |
18 |
atctagatgcgaatcactcggatgaacaacgcgaaaaccatgaaactgttgagaaatcagagaaagaagaaatggaaacagaagaacagagtgagtcagt |
117 |
Q |
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| T |
48749403 |
atctagatgcgaatcactcggatgaacaacgcgaaaaccatgaaactgttgagaaatcagagaaagaagaaatggaaacagaagaacagagtcagtcagt |
48749502 |
T |
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| Q |
118 |
aacataatttgtttttattttctt------------------ccatgattcgggaagtgtaaatttaagatgagataaatttgttataatctgactgaaa |
199 |
Q |
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| T |
48749503 |
aacataatttgtttttattttcttaattttatctattttcttccatgattcgggaagtgtaaatttaagatgagataaatttgttataatctga----aa |
48749598 |
T |
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| Q |
200 |
ttaataatttgttataatctttggtgttatgacttatgaatgattttgagcttgagaaaaaaggaagtaattatggttgatgagtagtagtgagaagcaa |
299 |
Q |
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| T |
48749599 |
ttaataatttcttataatctttggtgttatgacttatgaatgattttgagcttgagaaaaaaggaagtaattatggttgatgagtagtagtgagaagcaa |
48749698 |
T |
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| Q |
300 |
gtaaacagaaaagtgtatgactgcgtaacgaaatttgtgtgcttaaaataaaaatgaaatatagatgacgtaacc-gaataataaagacaaattataccg |
398 |
Q |
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| T |
48749699 |
gtaaacagaacagtgtatgactgcgtaacgaaatttgtgtgcttaaaataaaaatgaa--atagatgacgtaaccggaataataaagacaaattataccg |
48749796 |
T |
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