View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8881_low_11 (Length: 283)
Name: NF8881_low_11
Description: NF8881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8881_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 3 - 267
Target Start/End: Complemental strand, 11683418 - 11683154
Alignment:
| Q |
3 |
tacatttttctctttcatgaaaaattgcggtgctcatattcataacatggtttaatgctgcaggaggtggaggaatattttaccaattacatactcaatg |
102 |
Q |
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| T |
11683418 |
tacatttttctctttcatgaaaaattgcggtgctcatattcataacatggtttaatgctgcaggaggtggaggaatattttaccaattacatactcaatg |
11683319 |
T |
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| Q |
103 |
acagtcttggaataattgccaatgcacacattgtctttgcagataaggaacctggtaaagcaatggctgagccatgtattgaacttgcaaagctattctc |
202 |
Q |
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| T |
11683318 |
acagtcttggaataattgccaatgcacacattgtctttgcagataaggaacctggtaaagcaatggctgagccatgtattgaacttgcaaagctattctc |
11683219 |
T |
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| Q |
203 |
agtagcagttgattttccaaaaaccggtatcccagcagttatacctcctcatctttttgccaaag |
267 |
Q |
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| T |
11683218 |
agtagcagttgattttccaaaaaccggtatcccagcagttatacctcctcatctttttgccaaag |
11683154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 42 - 267
Target Start/End: Complemental strand, 11675795 - 11675570
Alignment:
| Q |
42 |
tcataacatggtttaatgctgcaggaggtggaggaatattttaccaattacatactcaatgacagtcttggaataattgccaatgcacacattgtctttg |
141 |
Q |
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| T |
11675795 |
tcataacatggttttatggtgcaggaggtggaggagtattttaccaattacatgctcaatgacagtcttggaataatttccaatgcacacactgtctttg |
11675696 |
T |
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| Q |
142 |
cagataaggaacctggtaaagcaatggctgagccatgtattgaacttgcaaagctattctcagtagcagttgattttccaaaaaccggtatcccagcagt |
241 |
Q |
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| T |
11675695 |
cagataaagaacctgctaaagcaatgtctgagccatgtattgaacttgcaaagctattctcaatagcagttgattttccaaaaaccggtatcccagcagt |
11675596 |
T |
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| Q |
242 |
tatacctcctcatctttttgccaaag |
267 |
Q |
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| T |
11675595 |
tataccccctcatcttttcgccaaag |
11675570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 45 - 267
Target Start/End: Original strand, 11639611 - 11639833
Alignment:
| Q |
45 |
taacatggtttaatgctgcaggaggtggaggaatattttaccaattacatactcaatgacagtcttggaataattgccaatgcacacattgtctttgcag |
144 |
Q |
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||||||||||||||| |||||||||||||||| ||||| |||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
11639611 |
taacatggtttaatggtgcaggaggtggaggagtatttcaccaattatatactcaatgacagtctcggaataattgccaatgcacacacagtctttgcag |
11639710 |
T |
|
| Q |
145 |
ataaggaacctggtaaagcaatggctgagccatgtattgaacttgcaaagctattctcagtagcagttgattttccaaaaaccggtatcccagcagttat |
244 |
Q |
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|||| ||||||| |||||||||| ||||||||||||| || |||||||||||||||||| |||||||||| |||||||| || ||||||||||| ||||| |
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| T |
11639711 |
ataaagaacctgctaaagcaatgtctgagccatgtatcgagcttgcaaagctattctcaatagcagttgactttccaaagactggtatcccagccgttat |
11639810 |
T |
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| Q |
245 |
acctcctcatctttttgccaaag |
267 |
Q |
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||||| | | ||||| ||||||| |
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| T |
11639811 |
acctcgtgaacttttcgccaaag |
11639833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 44 - 249
Target Start/End: Original strand, 11630848 - 11631053
Alignment:
| Q |
44 |
ataacatggtttaatgctgcaggaggtggaggaatattttaccaattacatactcaatgacagtcttggaataattgccaatgcacacattgtctttgca |
143 |
Q |
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|||||||||||| ||| ||||||| ||| || | ||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
11630848 |
ataacatggttttatggtgcaggaagtgcagaagtattttaccgattacatactcaatgattgtcttggaataattgccaatgcacacactgtctttgca |
11630947 |
T |
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| Q |
144 |
gataaggaacctggtaaagcaatggctgagccatgtattgaacttgcaaagctattctcagtagcagttgattttccaaaaaccggtatcccagcagtta |
243 |
Q |
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| T |
11630948 |
gacaaagaacctggaaaagcaatggctgatccatgtgttgagcttgcaaagctattctcaacagcagttgactttccaaaaaccggtatcccagcagaaa |
11631047 |
T |
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| Q |
244 |
tacctc |
249 |
Q |
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|||||| |
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| T |
11631048 |
tacctc |
11631053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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