View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8881_low_13 (Length: 274)
Name: NF8881_low_13
Description: NF8881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8881_low_13 |
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| [»] chr8 (2 HSPs) |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 4617335 - 4617608
Alignment:
| Q |
1 |
tcaactaactctacaagcttattatcattgattccacccgctagtttattcttaaagaattgattctccttcttgagttcctttatgattctgaactctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4617335 |
tcaactaactctacaagcttattatcattgattccaccagctggtttattcttaaagaattgattctccttcttgagttcctttatgattctgccctctt |
4617434 |
T |
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| Q |
101 |
actttaaccacaatgatgaaaaaggcagatgactttataattatactcatccaagtagatatgatatatatgattcaagcaaatatgattagaacaaatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4617435 |
actttaaccacaatgatgaaaaaggcagatgactttataattatactcatccaagtagatatgatatatatgattcaagcaaatatgattagaacaaatg |
4617534 |
T |
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| Q |
201 |
aaataaataattatgaaaattaagtttaccttatcaatctctttgtttacatgtttcaaatacatcattgttct |
274 |
Q |
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| T |
4617535 |
aaataaatatttatgaaaattaagtttaccttatcaatctctttgtttacatgtttcaaatacatcattgttct |
4617608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 274
Target Start/End: Original strand, 4617609 - 4617641
Alignment:
| Q |
242 |
tttgtttacatgtttcaaatacatcattgttct |
274 |
Q |
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| T |
4617609 |
tttgtttatatgtttcaaatacatcattgttct |
4617641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 50 - 274
Target Start/End: Original strand, 26978823 - 26979038
Alignment:
| Q |
50 |
tcttaaagaattgattctccttcttgagttcctttat-gattctgaactcttactttaaccacaatgatgaaaaaggcagatgactttataattatactc |
148 |
Q |
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|||| |||||||||||||||||||||| |||||| || |||| || ||| | ||||||| ||||||||||||||| | || | |||| ||||| || | |
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| T |
26978823 |
tcttcaagaattgattctccttcttgatttccttcattgattttgccatctgattttaaccgcaatgatgaaaaaggaaaataaatttagaattacaccc |
26978922 |
T |
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| Q |
149 |
atccaagtagatatgatatatatgattcaagcaaatatgattagaacaaatgaaataaataattatga-aaattaagtttaccttatcaatctctttgtt |
247 |
Q |
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||| |||||||||| ||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||| |||||||| | ||| |
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| T |
26978923 |
atcaaagtagatat-----atatgattcaagcaaatgtgattagaacaaatgaaata-----ttatgagaaattaagtttaccttctcaatctc-tagtt |
26979011 |
T |
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| Q |
248 |
tacatgtttcaaatacatcattgttct |
274 |
Q |
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| T |
26979012 |
taaatgtttcaattacatcattgttct |
26979038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 45 - 270
Target Start/End: Original strand, 43033946 - 43034159
Alignment:
| Q |
45 |
tttattcttaaagaattgattctccttcttgagttcctttat-gattctgaactcttactttaaccacaatgatgaaaaaggcagatgactttataatta |
143 |
Q |
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|||| |||| || |||||||||||||||||||||||||| || |||| || ||| | ||| |||||||||||| |||||||||| || |||| ||||| |
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| T |
43033946 |
tttactcttcaaaaattgattctccttcttgagttccttcattgattttgccatctgattttgaccacaatgatggaaaaggcagacga-tttagaatta |
43034044 |
T |
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| Q |
144 |
tactcatccaagtagatatgatatatatgattcaagcaaatatgattagaacaaatgaaataaataattatga-aaattaagtttaccttatcaatctct |
242 |
Q |
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| T |
43034045 |
tgctcatccaacta--------agatatgattcaagcaaatatgatttgaaaaaatgaaatatttaa----gagaaatcaagtttaccttctcaatctct |
43034132 |
T |
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| Q |
243 |
ttgtttacatgtttcaaatacatcattg |
270 |
Q |
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| T |
43034133 |
t-gtttaaatgtttcaaatacatcattg |
43034159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 205
Target Start/End: Complemental strand, 48507075 - 48507009
Alignment:
| Q |
134 |
tttataattatactcatccaagtagatatgatatatatgattcaagcaaatatgattagaacaaatgaaata |
205 |
Q |
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| T |
48507075 |
tttataattatactcatccaagtagatat-----atatgatttaagcaaatatgattagaacaaataaaata |
48507009 |
T |
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