View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8881_low_16 (Length: 240)
Name: NF8881_low_16
Description: NF8881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8881_low_16 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 6 - 240
Target Start/End: Complemental strand, 47599504 - 47599270
Alignment:
| Q |
6 |
atggacatcaacaaccaaatcagacctaacaatccctctaaccatcatgtgcacaccactctcccaacacggcactgacctacctcttctcccttacgat |
105 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47599504 |
atggccatcaacaaccaaatcagacctaacaatccctctaaccatcatgtgcacaccactctcccaacacggcactgacctacctcttctcccttacgat |
47599405 |
T |
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| Q |
106 |
cctctcctctgcactcgatgcggcgccgttttaaacccttacgctcgtctcgattatcaatcacgtatctggcactgtcccttttgttctcaacgaaacc |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47599404 |
cctctcctctgcactcgatgcggcgccgttttaaacccttacgctcgtctcgattatcaatcacgtatctggcactgtcccttttgttctcaacgaaacc |
47599305 |
T |
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| Q |
206 |
cttttcctcgctccatcgccgacgctaatcttccc |
240 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
47599304 |
cttttcctcgctccatcgccgacgctaatcttccc |
47599270 |
T |
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