View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8881_low_17 (Length: 237)
Name: NF8881_low_17
Description: NF8881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8881_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 10 - 219
Target Start/End: Complemental strand, 18253375 - 18253170
Alignment:
| Q |
10 |
agaagcagagacaacgaaatgaaatataaataattgaaagaaaacccagtaatcctgaagattcctcaatctttcatatgaataacatcatatatagttt |
109 |
Q |
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| T |
18253375 |
agaaacagacacaacgaaatgaaagataaataattaaaagaaaacccagtaatcctgaagattcctcattctttcatatgaataacatcata----gttt |
18253280 |
T |
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| Q |
110 |
aaccactacctccaagaacactcttaagcttcttcactacagcaggatcaataaaagtagttgcagtaatcaacttcgttggaaaatcgctttcaaacaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18253279 |
aaccactacctccaagaacactcttaagcttcttcactacagcaggatcaataaaagtagttgcagtaatcaacttcgttggaaaatcgctttcaaacaa |
18253180 |
T |
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| Q |
210 |
agcgtaatcc |
219 |
Q |
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|||||||||| |
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| T |
18253179 |
agcgtaatcc |
18253170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 46 - 219
Target Start/End: Original strand, 18256230 - 18256398
Alignment:
| Q |
46 |
aaagaaaacccagtaatcctgaagattcctcaatctttcatatgaataacatcatatatagtttaaccactacctccaagaacactcttaagcttcttca |
145 |
Q |
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|||||||| ||||||| | ||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||| || |||||||||||||| |
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| T |
18256230 |
aaagaaaagccagtaa-catgaagattcctcactctttcatatgaataacatcataa----tttaaccacgacctccaagaatacccttaagcttcttca |
18256324 |
T |
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| Q |
146 |
ctacagcaggatcaataaaagtagttgcagtaatcaacttcgttggaaaatcgctttcaaacaaagcgtaatcc |
219 |
Q |
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| T |
18256325 |
ctacagcaggatcaataaaagtagttgcagtaatcaacttcgttggaaaatcgctttcaaacaaagcgtaatcc |
18256398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 107 - 212
Target Start/End: Complemental strand, 18246178 - 18246073
Alignment:
| Q |
107 |
tttaaccactacctccaagaacactcttaagcttcttcactacagcaggatcaataaaagtagttgcagtaatcaacttcgttggaaaatcgctttcaaa |
206 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||| ||| |
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| T |
18246178 |
tttaaccactacctccaagaacacccttaagcttcttcactacagcagcatcaataaaagtagttgcagtaatcaactccgttggaaaatcacttttaaa |
18246079 |
T |
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| Q |
207 |
caaagc |
212 |
Q |
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|||||| |
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| T |
18246078 |
caaagc |
18246073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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