View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8881_low_18 (Length: 237)
Name: NF8881_low_18
Description: NF8881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8881_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 27649811 - 27649594
Alignment:
| Q |
1 |
ccagtaagaagcgcccggttgggaataaagaagcggttaggaagtatcgcgagaagaagaaagctagggctgcgtcgttggaggatgaggtgatgaaatt |
100 |
Q |
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| T |
27649811 |
ccagtaagaagcggcccgttgggaataaagaagcggttaggaagtatcgcgagaagaagaaagctagggctgcgtcgttggaggatgaggtgatgaaatt |
27649712 |
T |
|
| Q |
101 |
gagggctttgaatcagcatttgatgaggaagttgcagggtcaggctgctttggaggcggaagttgcgaggttgaagtgtttgttggttgatattaggggg |
200 |
Q |
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| T |
27649711 |
gagggctttgaatcagcatttgatgaggaagttgcagggtcaggctgctttggaggcggaagttgcgaggttgaagtgtttgttggttgatattaggggg |
27649612 |
T |
|
| Q |
201 |
aggattgaaggggaaatt |
218 |
Q |
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|||||||||||||||||| |
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| T |
27649611 |
aggattgaaggggaaatt |
27649594 |
T |
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