View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8881_low_21 (Length: 213)
Name: NF8881_low_21
Description: NF8881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8881_low_21 |
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| [»] scaffold0312 (1 HSPs) |
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| [»] scaffold1626 (1 HSPs) |
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Alignment Details
Target: scaffold0312 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: scaffold0312
Description:
Target: scaffold0312; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 22 - 197
Target Start/End: Original strand, 3020 - 3195
Alignment:
| Q |
22 |
aagtatggttatgaaaccaactatgtttatgttatttgtactctatttgttatttcaagatgaaaacatataaaactaatttggcatcttccacaggaag |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||| |
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| T |
3020 |
aagtatggttatgaaaccaactatgtttatgttatttgtactctatttgttatttcaagatgaaaacatataaaactaaattggtatctttcacaggaag |
3119 |
T |
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| Q |
122 |
caggttaagggtttcacgcggttcttctcattcagtttgctttggtctttcttccaatggttctatgctggtgatg |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3120 |
caggttaagggtttcacgcggttcttctcattcagtttgctttggtctttcttccaatggttctatgctggtgatg |
3195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 164; Significance: 8e-88; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 22 - 197
Target Start/End: Complemental strand, 427530 - 427355
Alignment:
| Q |
22 |
aagtatggttatgaaaccaactatgtttatgttatttgtactctatttgttatttcaagatgaaaacatataaaactaatttggcatcttccacaggaag |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||| |
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| T |
427530 |
aagtatggttatgaaaccaactatgtttatgttatttgtactctatttgttatttcaagatgaaaacatataaaactaaattggtatctttcacaggaag |
427431 |
T |
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| Q |
122 |
caggttaagggtttcacgcggttcttctcattcagtttgctttggtctttcttccaatggttctatgctggtgatg |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
427430 |
caggttaagggtttcacgcggttcttctcattcagtttgctttggtctttcttccaatggttctatgctggtgatg |
427355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 22 - 197
Target Start/End: Complemental strand, 402481 - 402306
Alignment:
| Q |
22 |
aagtatggttatgaaaccaactatgtttatgttatttgtactctatttgttatttcaagatgaaaacatataaaactaatttggcatcttccacaggaag |
121 |
Q |
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||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
402481 |
aagtatgattatgaaaccaattatgtttatgttatttgaactctatttgttatttcaagatgaaaacatataaaactaatttggcatctttcacaggaag |
402382 |
T |
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| Q |
122 |
caggttaagggtttcacgcggttcttctcattcagtttgctttggtctttcttccaatggttctatgctggtgatg |
197 |
Q |
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||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
402381 |
caggttaagggtttcacgcggttcttctcgttcagtttgctctggtctttcttccaatggttctatgctggtgatg |
402306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 22 - 197
Target Start/End: Complemental strand, 409728 - 409553
Alignment:
| Q |
22 |
aagtatggttatgaaaccaactatgtttatgttatttgtactctatttgttatttcaagatgaaaacatataaaactaatttggcatcttccacaggaag |
121 |
Q |
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||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
409728 |
aagtatgattatgaaaccaattatgtttatgttatttgaactctatttgttatttcaagatgaaaacatataaaactaatttggcatctttcacaggaag |
409629 |
T |
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| Q |
122 |
caggttaagggtttcacgcggttcttctcattcagtttgctttggtctttcttccaatggttctatgctggtgatg |
197 |
Q |
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|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
409628 |
caggttaagggtttcatgcaattcttctcattcagtttgctttggtctttcttccaatggttctatgcgggtgatg |
409553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 22 - 197
Target Start/End: Complemental strand, 440066 - 439889
Alignment:
| Q |
22 |
aagtatggttatgaaaccaactatgtttatgttatttgtactctat--ttgttatttcaagatgaaaacatataaaactaatttggcatcttccacagga |
119 |
Q |
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||||||| ||||||||| || ||||||| || |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
440066 |
aagtatgattatgaaacaaattatgtttgtgctatttgtattctatatttgttatttcaagatgaaaacatataaaactaatttggcatctttcacagga |
439967 |
T |
|
| Q |
120 |
agcaggttaagggtttcacgcggttcttctcattcagtttgctttggtctttcttccaatggttctatgctggtgatg |
197 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
439966 |
agcaggttaagggtttcacgcaattcttctcattcagtttgctttggtctttcttccaatggttctatgctggtgatg |
439889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1626 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: scaffold1626
Description:
Target: scaffold1626; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 22 - 197
Target Start/End: Original strand, 49 - 224
Alignment:
| Q |
22 |
aagtatggttatgaaaccaactatgtttatgttatttgtactctatttgttatttcaagatgaaaacatataaaactaatttggcatcttccacaggaag |
121 |
Q |
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||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
49 |
aagtatgattatgaaaccaattatgtttatgttatttgaactctatttgttatttcaagatgaaaacatataaaactaatttggcatctttcacaggaag |
148 |
T |
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| Q |
122 |
caggttaagggtttcacgcggttcttctcattcagtttgctttggtctttcttccaatggttctatgctggtgatg |
197 |
Q |
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|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
149 |
caggttaagggtttcaagcaattcttctcattcagtttgctttggtctttcttccaatggttctatgcaggtgatg |
224 |
T |
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