View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8881_low_6 (Length: 406)
Name: NF8881_low_6
Description: NF8881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8881_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 15 - 402
Target Start/End: Complemental strand, 10032640 - 10032253
Alignment:
| Q |
15 |
aggatcaatcaccacaccgggccaagccggaaacctcttcccgcatttcgcccaaacaatatcacccaaagtaaattcctccagcctataaacatctttc |
114 |
Q |
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| T |
10032640 |
aggatcaatcaccacaccgggccaagccggaaacctcttcccgcatttcgcccaaacaatatcacccaaagtaaattcctccagcctataaacatctttc |
10032541 |
T |
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| Q |
115 |
ctccttcccacattcccattaatcttttcatctgcaccgtcaaaactaagaccggaaccagaaccattactcccggtcttcaccataaccttaccatcgt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10032540 |
ctccttcccacattcccattaatcttttcatctgcaccgtcaaaactaagaccggaaccagaaccattactcccggtcttcaccataaccttaccatcgt |
10032441 |
T |
|
| Q |
215 |
tttcaaagcttgacggaagcacctgaggaccgccacacgagaaccgtactttcaccgttttacgcgatgaattcaattcaacttcgccaacaccaccatt |
314 |
Q |
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| T |
10032440 |
tttcaaagcttgacggaagcacctgaggaccgccacacgagaaccgtactttcaccgttttacgcgatgaattcaattcaacttcgccaacaccaccatt |
10032341 |
T |
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| Q |
315 |
atttgtaacttcactgttccatgaagcagaaccagtgtcaaaatccacttcagaattaaacccattcactttatgcttcttctcactc |
402 |
Q |
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| T |
10032340 |
atttgtaacttcactgttccatgaagcagaaccagtgtcaaaatccacttcaggattaaacccatccaccttatgcttcttctgactc |
10032253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 48487139 - 48487208
Alignment:
| Q |
15 |
aggatcaatcaccacaccgggccaagccggaaacctcttcccgcatttcgcccaaacaatatcacccaaa |
84 |
Q |
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||||||||| || ||| | ||||| |||||||| |||| || ||||| ||||||||||||||||||||| |
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| T |
48487139 |
aggatcaatgacaacagcaggccatgccggaaaagtcttgccacattttgcccaaacaatatcacccaaa |
48487208 |
T |
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