View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8882_high_3 (Length: 395)
Name: NF8882_high_3
Description: NF8882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8882_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 298
Target Start/End: Complemental strand, 51755896 - 51755611
Alignment:
| Q |
18 |
gttactaggaacacgcgctggacaagcatcatcatgacgaggttccaacacttccagacctaggtgaggtttatcggaggaagtgtcgtgggaaggaggt |
117 |
Q |
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| T |
51755896 |
gttactaggaacacgcgctggacaagcataatcatgacgaggttccaacacttccagacctaggtgaggtttatcggaggaagtgtcgtgggaaggaggt |
51755797 |
T |
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| Q |
118 |
aacaattcaggtttaggggttgggatcctccagaagattacggcgagccatgtccataaatggttgaagaaatcgaagctcaagtagttgaaagctagag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51755796 |
aacaattcaggtttaggggttgggatcctccagaagatgacggcgagccatgtccataaatggttgaagaaatcgaagctcaagtagttgaaagctagag |
51755697 |
T |
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| Q |
218 |
tgtcaagtggagaattttctgacatgttcatctctgtgagcgtgttc-----ttcttttaacttttgatggtaagagtggaggggg |
298 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
51755696 |
tgtcaagtggagaattttctaacatgttcatctctgtgagcgtgttcttctcttcttttcacttttgatggtaagagtggaggggg |
51755611 |
T |
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