View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8882_high_4 (Length: 364)
Name: NF8882_high_4
Description: NF8882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8882_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 8 - 346
Target Start/End: Complemental strand, 29039667 - 29039328
Alignment:
| Q |
8 |
ttggtgttcttgatatttaatttcttgttattcgttgaattgcannnnnnn-gatttgcctatttaattgtatagatgagaaaaatgataaaatatttgt |
106 |
Q |
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| T |
29039667 |
ttggtgttcttgatatttaatttcttgttattcgttgaattgcattttttttgatttgcctatttaattgtacagatgagaaaaatgataaaatatttgt |
29039568 |
T |
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| Q |
107 |
ttcatagagactgtatcatttctctgatttttccgatcactttccatgaatttccacaagcctaaagtcaagtcaattaacccaattaatacgtatgttc |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
29039567 |
ttcatagagactgtatcatttctctgatttttccgatcactttccatgaatttccacaagcctaaagtcaagtcaattaacccaattcatacgtatgttc |
29039468 |
T |
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| Q |
207 |
acaggtattgaaaaagcactaagatcattctttcatgtctttgaaagcaccagtttgaatcaatgaacatggaacaaaagaattctcatgatagctttgt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29039467 |
acaggtattgaaaaagcactaagatcattctttcatgtctttgaaagcaccagtttgaatcaatgaacatggaacaaaagaattctcatgatagctttgt |
29039368 |
T |
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| Q |
307 |
agatcttgtttgccactatcaatttgaaaatgggtcatct |
346 |
Q |
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|||||||||||||||||||||||||||||||| |||||| |
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| T |
29039367 |
ggatcttgtttgccactatcaatttgaaaatggttcatct |
29039328 |
T |
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